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Sample GSM1120518 Query DataSets for GSM1120518
Status Public on Apr 10, 2014
Title Day 3 post PBS mock sample 4
Sample type RNA
 
Source name Day 3 post PBS mock
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.5648999071454 8647.535 1638.12670281041 0 50
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5777802131163 2133.224 468.238152406785 0 33
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.9078493380793 2763.078 467.816118868092 0 50
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3846856888601 14260.28 2231.06405769677 0 59
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.01153656304631 414.8167 133.7604 0 36
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.6047005032744 2184.376 498.926518912544 0 48
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.94753759947563 1240.766 407.607510627659 0 33
ILMN_2737647 QblRddpw5X.qvuqKOA 8.59956097486096 180.8545 65.0278130333752 0.2017544 31
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.61213137212623 889.0743 212.696445673711 0 28
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.74878471022488 255.0028 87.4523726325393 0.01503759 45
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.47133803138115 127.2848 47.705564220432 0.9235589 40
ILMN_1213681 odfnyvXghIeuVEvU6U 10.1045565841398 1432.088 314.027642957552 0 40
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.60104586160816 181.4915 57.94813610929 0.1942356 32
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.7536496995901 257.7986 89.7637197681201 0.01253133 31
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.8646980001571 2663.503 784.075210285563 0 35
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.8912418031447 5616.865 1173.15029952761 0 51
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.84230417653445 1119.074 339.466123145535 0 42
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.6334791587444 195.8977 74.3615741512994 0.122807 42
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.76314636847587 262.5902 95.600074835364 0.0112782 38
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.69586905960755 227.0865 82.4928107619779 0.03634085 35

Total number of rows: 25697

Table truncated, full table size 2100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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