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Sample GSM1120520 Query DataSets for GSM1120520
Status Public on Apr 10, 2014
Title Day 3 post PBS mock and linezolid treated sample 2
Sample type RNA
 
Source name Day 3 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.7486715062731 8404.632 1542.63556878293 0 41
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.6935688428639 2018.076 572.46596072209 0 59
ILMN_3033922 xnx7ijE2CcOSlY55eA 11.2731615023876 3106.937 818.902128995254 0 56
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3082292370567 12253.15 2001.92526720975 0 41
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.01886710242724 390.8748 172.542623465426 0 31
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.5093435592596 1757.181 477.186444028076 0 34
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.87486048425743 1018.106 400.298436379689 0 27
ILMN_2737647 QblRddpw5X.qvuqKOA 8.63520368299155 193.0893 83.88725 0.1353384 25
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.0688733859645 1208.593 297.082842485195 0 28
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.72218900168792 233.1082 83.4655268062402 0.03132832 32
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.48803574913368 132.6866 47.1296668339423 0.8308271 59
ILMN_1213681 odfnyvXghIeuVEvU6U 9.85098012367913 996.1538 292.365950621093 0 38
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.69036962728718 217.9483 81.2523211470048 0.05639098 40
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.66620079012647 207.1747 75.7087225001486 0.07769424 45
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.9864531685298 2518.531 608.878095824235 0 38
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.9564908021863 5051.019 1098.42078935337 0 43
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.72697723015098 876.1341 239.480884009061 0 46
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.62046115964806 186.4694 64.172316271464 0.160401 32
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.72820909641411 236.1432 57.0866537756348 0.03007519 32
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.76690367561075 255.8018 123.423149580555 0.01754386 35

Total number of rows: 25697

Table truncated, full table size 2101 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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