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Sample GSM1120525 Query DataSets for GSM1120525
Status Public on Apr 10, 2014
Title Day 3 post MRSA wild type infection and linezolid treated sample 3
Sample type RNA
 
Source name Day 3 post MRSA wild type infection and linezolid treated
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: MRSA LAC
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post MRSA wild type infection and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.2693140782069 5951.776 1158.75125228277 0 42
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.4203138811948 1637.538 383.578018868657 0 40
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.6025608062226 1905.122 462.93597 0 49
ILMN_3092673 xPkUXaq37oR_vSi6HY 12.9137449250986 8748.64 1639.0326 0 36
ILMN_2816356 3rtRBd9AcK1Qq07fGI 8.94316442963394 353.6105 94.4113206429557 0.002506266 30
ILMN_2808939 ZqRKnn0K14kTIep1.c 11.1383340688517 2774.371 667.461815444659 0 52
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.8347742148128 988.9629 259.605769431267 0 32
ILMN_2737647 QblRddpw5X.qvuqKOA 8.60397741241132 197.6441 56.5146568983197 0.2706767 33
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.67498402718664 852.1793 275.372567339961 0 46
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.71462758619422 248.9048 82.1566090633444 0.06140351 42
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.51103681816087 154.0894 61.0614 0.7030075 36
ILMN_1213681 odfnyvXghIeuVEvU6U 9.98923387381541 1140.595 275.2008 0 49
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.71155999890602 247.801 100.745236639452 0.0689223 32
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.72339651342899 252.5864 84.6984150622667 0.05513784 46
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.3796600108643 1579.134 490.60938 0 36
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.5126546888924 3574.93 1008.522 0 36
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 10.0081377082433 1155.869 286.48626116025 0 48
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.65553526905133 221.4539 59.8014201278812 0.1428571 39
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.75760363705314 267.0655 108.972086656185 0.03634085 30
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.7567123167883 266.6124 74.2341412799906 0.03634085 19

Total number of rows: 25697

Table truncated, full table size 2108 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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