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Sample GSM1124234 Query DataSets for GSM1124234
Status Public on Apr 20, 2013
Title M_133A_16_AnCg_1_C_p
Sample type RNA
 
Source name Post-mortem human brain tissue: Anterior Cingulate
Organism Homo sapiens
Characteristics genechip assay site: M
original genechip type: U133P
subject id: 16
brain region: anterior cingulate
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip U133A Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000.
Data processing The data were analyzed with the RMA method using custom CDF file hgu133ahsentrezg.cdf.
 
Submission date Apr 17, 2013
Last update date Apr 20, 2013
Contact name Andy W Lin
E-mail(s) andylin@umich.edu
Organization name University of Michigan
Department MBNI
Lab Microarray
Street address 205 Zina Pitcher Place
City Ann Arbor
State/province MI
ZIP/Postal code 48103
Country USA
 
Platform ID GPL17027
Series (1)
GSE45642 Circadian patterns of gene expression in the human brain and disruption in major depressive disorder [control set]

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
10000_at 5.477490462
10001_at 6.828526892
10002_at 5.466221259
10003_at 5.391056873
100048912_at 6.62604147
10004_at 5.571961581
10005_at 8.099532661
10006_at 9.010222207
10007_at 8.447372633
10009_at 4.849569088
1000_at 8.718466171
10010_at 6.463207964
100127886_at 4.679516256
100127972_at 5.327420096
100128008_at 6.398052035
100128062_at 9.808983309
100128414_at 4.758616819
100128919_at 7.100108949
100129015_at 5.145101045
100129128_at 4.998202363

Total number of rows: 11979

Table truncated, full table size 238 Kbytes.




Supplementary file Size Download File type/resource
GSM1124234_M_133A_16_AnCg_1_C_p.cel.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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