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Sample GSM1129266 Query DataSets for GSM1129266
Status Public on Apr 25, 2013
Title Stems of D11 mutant
Sample type RNA
 
Source name Stems_mut
Organism Zea mays
Characteristics tissue: Stem
genotype: D11 mutant
developmental stage: Tassel emergence
Treatment protocol No
Growth protocol All experimental materials were single-grain sowed and nursed with normal agricultural practice.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000.
Description Gene expression data from D11
Data processing Raw data were normalized by MAS 5.0 algorithm implemented in Expression Console.
 
Submission date Apr 25, 2013
Last update date Apr 25, 2013
Contact name Yijun Wang
E-mail(s) wyj@yzu.edu.cn
Organization name Yangzhou University
Street address Wenhui
City Yangzhou
State/province Jiangsu
ZIP/Postal code 225009
Country China
 
Platform ID GPL4032
Series (1)
GSE46370 Expression data from maize D11 mutant

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 160.756 P 6.02111e-05
AFFX-BioB-M_at 251.377 P 5.16732e-05
AFFX-BioB-3_at 202.331 P 4.42873e-05
AFFX-BioC-5_at 455.776 P 4.42873e-05
AFFX-BioC-3_at 595.219 P 4.42873e-05
AFFX-BioDn-5_at 1117.56 P 4.42873e-05
AFFX-BioDn-3_at 2178.1 P 4.42873e-05
AFFX-CreX-5_at 6007.96 P 5.16732e-05
AFFX-CreX-3_at 7084.49 P 4.42873e-05
AFFX-DapX-5_at 260.485 P 5.16732e-05
AFFX-DapX-M_at 517.497 P 6.02111e-05
AFFX-DapX-3_at 768.586 P 4.42873e-05
AFFX-LysX-5_at 56.743 P 0.000169025
AFFX-LysX-M_at 51.6361 P 0.000581214
AFFX-LysX-3_at 123.976 P 6.02111e-05
AFFX-PheX-5_at 51.5336 P 5.16732e-05
AFFX-PheX-M_at 50.7642 P 0.000339937
AFFX-PheX-3_at 64.8786 P 8.14279e-05
AFFX-ThrX-5_at 73.1132 P 0.000126798
AFFX-ThrX-M_at 133.333 P 6.99729e-05

Total number of rows: 17734

Table truncated, full table size 656 Kbytes.




Supplementary file Size Download File type/resource
GSM1129266_BH11438-2_D11JINGAN_Maize_.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM1129266_BH11438-2_D11JINGAN_Maize_.mas5.CHP.gz 194.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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