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GEO accession:
Sample GSM113366
Query DataSets for GSM113366
Status
Public on Jul 27, 2006
Title
1% dmso batch 2
Sample type
RNA
Source name
1% dmso batch 2
Organism
Homo sapiens
Characteristics
astrocytes from second trimester human fetal brains
Extracted molecule
total RNA
Label
biotin
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
astrocytes from second trimester (14-19 weeks) human fetal brains
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Jun 08, 2006
Last update date
Jul 27, 2006
Contact name
Sarah Mense
E-mail(s)
smm2123@columbia.edu
Organization name
Columbia University
Department
Environmental Health Sciences
Lab
Dr. Zhang
Street address
722 West 168th Street
City
New York
State/province
NY
ZIP/Postal code
10032
Country
USA
Platform ID
GPL570
Series (2)
GSE5023
The Insecticides Cyfluthrin & Chlorpyrifos Alter Expression of Genes with Diverse Functions in Primary Human Astrocytes
GSE5080
Harmane Alters the Expression of a Subset of Genes with Diverse Functions in Primary Human Astrocytes
Data table header descriptions
ID_REF
Affymetrix ID reference
VALUE
GCOS 1.2-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
512.7
P
0.000754
AFFX-BioB-M_at
558.4
P
0.000225
AFFX-BioB-3_at
329.6
P
0.000127
AFFX-BioC-5_at
1336.2
P
0.000081
AFFX-BioC-3_at
1269.5
P
0.000044
AFFX-BioDn-5_at
2213.6
P
0.000044
AFFX-BioDn-3_at
6796.3
P
0.000127
AFFX-CreX-5_at
16056.7
P
0.000044
AFFX-CreX-3_at
16277.8
P
0.000044
AFFX-DapX-5_at
21.8
A
0.216524
AFFX-DapX-M_at
31.7
A
0.185131
AFFX-DapX-3_at
5.1
A
0.921998
AFFX-LysX-5_at
20.9
A
0.262827
AFFX-LysX-M_at
5.7
A
0.760937
AFFX-LysX-3_at
4.4
A
0.52976
AFFX-PheX-5_at
5.6
A
0.804734
AFFX-PheX-M_at
5.8
A
0.824693
AFFX-PheX-3_at
11.4
A
0.724854
AFFX-ThrX-5_at
6.3
A
0.883887
AFFX-ThrX-M_at
36.8
A
0.287743
Total number of rows:
54675
Table truncated, full table size
1435 Kbytes
.
Supplementary data files not provided
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