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Sample GSM114069 Query DataSets for GSM114069
Status Public on Nov 21, 2006
Title large airways, smoker 010809R, MAS5
Sample type RNA
 
Source name airway epithelial cells obtained by bronchoscopy and brushing
Organism Homo sapiens
Characteristics Age: 38
Sex: M
Ethnic group: black
Smoking Status: smoker, 14 pack-years
Lung: right
Extracted molecule total RNA
Extraction protocol Trizol extraction and RNAeasy clean-up of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA.
 
Hybridization protocol Following fragmentation, 15 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HuGeneFL. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GeneArray 2500.
Description large airways, non-smoker 010809R, MAS5
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Jun 12, 2006
Last update date Dec 19, 2006
Contact name Yael Strulovici-Barel
E-mail(s) yas2003@med.cornell.edu
Organization name Weill Cornell Medical College
Department Department of Genetic Medicine
Lab Crystal
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL80
Series (3)
GSE5056 Airway epithelium, large airways, phenotypically normal smokers vs non-smokers, MAS5 (HuGeneFL)
GSE5060 Airway epithelium, large and small airways, phenotypically normal smokers, non-smokers, early COPD and COPD
GSE10135 Cigarette Smoking Induces Overexpression of a Fat Depleting Gene AZGP1 in the Human Airway Epithelium

Data table header descriptions
ID_REF Probe set ID
VALUE MAS5-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
A28102_at 1035.4 A 0.262827
AB000114_at 489.4 A 0.300606
AB000115_at 1509.3 P 0.020022
AB000220_at 5266.6 P 0.000169
AB000381_s_at 277.2 A 0.60308
AB000409_at 2687.5 A 0.067678
AB000410_s_at 207.8 A 0.957038
AB000449_at 158.9 A 0.559354
AB000450_at 1753 A 0.083592
AB000460_at 4804.2 P 0.00011
AB000462_at 420.5 A 0.440646
AB000464_at 3785.7 P 0.002275
AB000466_at 677.2 A 0.834139
AB000467_at 1178.4 A 0.760937
AB000468_at 4097.9 P 0.002867
AB000584_at 7819.5 P 0.013811
AB000816_s_at 97.4 A 0.814869
AB000895_at 505.4 A 0.724854
AB000896_at 3231.4 P 0.039661
AB000897_at 1004.3 A 0.262827

Total number of rows: 7129

Table truncated, full table size 197 Kbytes.




Supplementary data files not provided
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