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Sample GSM114754 Query DataSets for GSM114754
Status Public on Jul 04, 2008
Title Pineal Culture CT18 NE vs. Vehicle (Dye-Swap) Replicate 6
Sample type RNA
 
Channel 1
Source name Chick pinealocytes; 18 hours after beginning of subjective day with 6-hour NE administration
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Chick pinealocytes; 18 hours after beginning of subjective day with 6-hour vehicle administration
Organism Gallus gallus
Characteristics Strain: WL-36
Gender: Male
Developmental Age: P1
Tissue of origin: Pineal gland
Extracted molecule total RNA
Label Cy5
 
 
Description Pineal Culture CT18 NE vs. Vehicle (Dye-Swap) Replicate 6
Data processing GenePixPro was used to generate a .gpr file, which was analyzed using GeneSpring software. Data were then subjected to LOWESS and dye-swap normalizations, and each time-point was reported as the normalized ratio of Cy3 to Cy5 intensity.
 
Submission date Jun 15, 2006
Last update date Jul 05, 2007
Contact name Phillip D. Beremand
E-mail(s) beremand@mail.bio.tamu.edu
Phone 979-845-0663
Fax 979-847-8805
Organization name Texas A&M University
Department Biology
Lab Laboratory for Functional Genomics
Street address
City College Station
State/province TX
ZIP/Postal code 77843-3258
Country USA
 
Platform ID GPL3731
Series (1)
GSE5292 Circadian Transcriptome of the Chicken Pineal In Vitro

Data table header descriptions
ID_REF
VALUE Natural logarithm of ratio of cy3 to cy5

Data table
ID_REF VALUE
1 0.468905589120266
2 0.272646147358062
3 0.429816784537627
4 0.723858231329471
5 0.586035131863313
6 null
7 0.146409709966255
8 -1.19125929786146
9 -0.22640335871776
10 -0.0911335998695745
11 0.478849451839314
12 0.0435884683004138
13 0.995651631784979
14 -0.246693179859784
15 -0.283180221008373
16 0.348667711446613
17 -0.0469620561775623
18 2.52972074525906
19 0.159835973588176
20 0.420736307504734

Total number of rows: 8084

Table truncated, full table size 184 Kbytes.




Supplementary data files not provided

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