NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1150649 Query DataSets for GSM1150649
Status Public on Jun 01, 2013
Title Undifferentiated H9 cells, biological rep 2
Sample type RNA
 
Source name human pluripotent stem cells (hPSCs)
Organism Homo sapiens
Characteristics cell type: Undifferentiated human H9 embryonic stem cells
Extracted molecule total RNA
Extraction protocol Extraction of total RNA using total RNA purification kit (Norgen Biotek, Canada) was performed according to the manufacturer's instructions.
Label biotin
Label protocol In accordance with manufacturer's protocols
 
Hybridization protocol In accordance with manufacturer's protocols
Scan protocol GeneChips were scanned using Affymetrix® Scanner 3000 7G.
Description Gene expression data from undifferentiated human H9 stem cells
Data processing Data was normalized using Robust Multichip Averaging (RMA) algorithm and baseline transformation to the median of all samples using GeneSpring 6.0 software.
 
Submission date May 29, 2013
Last update date Jun 01, 2013
Contact name Mickie Bhatia
E-mail(s) mbhatia@mcmaster.ca
Organization name McMaster University
Department Stem Cell and Cancer Research Institute (SCC-RI)
Street address 1200 Main Street West
City Hamilton
State/province Ontario
ZIP/Postal code L8N 3Z5
Country Canada
 
Platform ID GPL96
Series (1)
GSE47466 Notch-HES1 signaling axis controls hemato-endothelial fate decisions of human embyronic and induced pluripotent cells

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.458529
AFFX-BioB-M_at -0.26072407
AFFX-BioB-3_at -0.2839861
AFFX-BioC-5_at -0.44421005
AFFX-BioC-3_at -0.42720127
AFFX-BioDn-5_at -0.37821388
AFFX-BioDn-3_at -0.18634796
AFFX-CreX-5_at -0.24646187
AFFX-CreX-3_at -0.15006828
AFFX-DapX-5_at 0.16922164
AFFX-DapX-M_at 0.035261154
AFFX-DapX-3_at 0.023147583
AFFX-LysX-5_at -0.018258095
AFFX-LysX-M_at -5.69E-04
AFFX-LysX-3_at 0.00775218
AFFX-PheX-5_at 0.024258614
AFFX-PheX-M_at -0.07720518
AFFX-PheX-3_at -0.0631752
AFFX-ThrX-5_at 0.039574146
AFFX-ThrX-M_at 0.07885909

Total number of rows: 22283

Table truncated, full table size 491 Kbytes.




Supplementary file Size Download File type/resource
GSM1150649_HG-U133A_AFFY166_uhES_2.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap