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Sample GSM1150652 Query DataSets for GSM1150652
Status Public on Jun 01, 2013
Title Day 10 hematopoietic EB cells, bilogical rep 3
Sample type RNA
 
Source name human pluripotent stem cells (hPSCs)
Organism Homo sapiens
Characteristics cell type: Hematopoietic embryoid bodies after 10 days in hem conditions
Extracted molecule total RNA
Extraction protocol Extraction of total RNA using total RNA purification kit (Norgen Biotek, Canada) was performed according to the manufacturer's instructions.
Label biotin
Label protocol In accordance with manufacturer's protocols
 
Hybridization protocol In accordance with manufacturer's protocols
Scan protocol GeneChips were scanned using Affymetrix® Scanner 3000 7G.
Description Gene expression data from hematopoietic embryoid bodies after 10 days in hem conditions
Data processing Data was normalized using Robust Multichip Averaging (RMA) algorithm and baseline transformation to the median of all samples using GeneSpring 6.0 software.
 
Submission date May 29, 2013
Last update date Jun 01, 2013
Contact name Mickie Bhatia
E-mail(s) mbhatia@mcmaster.ca
Organization name McMaster University
Department Stem Cell and Cancer Research Institute (SCC-RI)
Street address 1200 Main Street West
City Hamilton
State/province Ontario
ZIP/Postal code L8N 3Z5
Country Canada
 
Platform ID GPL96
Series (1)
GSE47466 Notch-HES1 signaling axis controls hemato-endothelial fate decisions of human embyronic and induced pluripotent cells

Data table header descriptions
ID_REF
VALUE RMA Normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at -0.016240597
AFFX-BioB-M_at -0.01098156
AFFX-BioB-3_at 0.027298927
AFFX-BioC-5_at 0.003364563
AFFX-BioC-3_at -0.032159805
AFFX-BioDn-5_at 0.08842087
AFFX-BioDn-3_at 0.06840038
AFFX-CreX-5_at 0.02175808
AFFX-CreX-3_at 0.008178711
AFFX-DapX-5_at -0.118468046
AFFX-DapX-M_at -0.007605553
AFFX-DapX-3_at -0.05289793
AFFX-LysX-5_at 0.021957159
AFFX-LysX-M_at 0.06806445
AFFX-LysX-3_at 0.022182226
AFFX-PheX-5_at -0.09041858
AFFX-PheX-M_at -0.11878109
AFFX-PheX-3_at 0.11170244
AFFX-ThrX-5_at -0.046153784
AFFX-ThrX-M_at 0.01263833

Total number of rows: 22283

Table truncated, full table size 492 Kbytes.




Supplementary file Size Download File type/resource
GSM1150652_HG-U133A_AFFY171_hEB_d10_3.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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