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GEO accession:
Sample GSM116897
Query DataSets for GSM116897
Status
Public on Sep 30, 2006
Title
NA07055_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: B2
Biomaterial provider
Coriell NA07055
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA07055
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
15.266
0.116858
0.000000
SNP_A-1780618
BB
0.007813
15.685
0.000656
0.069484
SNP_A-1780632
AB
0.062500
7.836
0.673184
0.542418
SNP_A-1780654
AA
0.007813
23.554
0.987696
0.988907
SNP_A-4192495
AA
0.046875
10.287
0.785714
0.954581
SNP_A-4192498
AB
0.088379
3.041
0.302083
0.403288
SNP_A-1780732
BB
0.015625
12.021
0.000000
0.102352
SNP_A-1780848
BB
0.093750
3.866
0.018311
0.186300
SNP_A-1780985
AB
0.312500
3.402
0.535019
0.455394
SNP_A-1781022
AB
0.250000
1.563
0.600091
0.623377
SNP_A-1781076
BB
0.062500
14.749
0.231884
0.000000
SNP_A-1781249
AA
0.007813
9.708
1.000000
0.872426
SNP_A-1781276
AB
0.023438
10.453
0.460215
0.563327
SNP_A-1781302
BB
0.007813
16.273
0.186400
0.020543
SNP_A-1781510
AA
0.023438
26.419
0.969124
1.000000
SNP_A-4192564
BB
0.062500
7.591
0.056829
0.300443
SNP_A-1781614
AA
0.007813
24.205
0.987616
0.829451
SNP_A-1781633
AB
0.007813
14.013
0.464168
0.415842
SNP_A-1781764
BB
0.007813
11.094
0.135878
0.075518
SNP_A-1781829
AA
0.007813
4.559
0.930976
0.811251
Total number of rows:
262264
Table truncated, full table size
12949 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116897.CEL.gz
43.3 Mb
(ftp)
(http)
CEL
GSM116897.raw.txt.gz
26.2 Mb
(ftp)
(http)
TXT
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