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GEO accession:
Sample GSM116912
Query DataSets for GSM116912
Status
Public on Sep 30, 2006
Title
NA10855_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 3
Biomaterial provider
Coriell NA10855
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10855
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
11.248
0.107759
0.061538
SNP_A-1780618
AB
0.007813
9.430
0.406398
0.397590
SNP_A-1780632
AB
0.132813
4.699
0.598123
0.621103
SNP_A-1780654
AA
0.007813
18.910
0.972617
1.000000
SNP_A-4192495
AA
0.007813
5.652
1.000000
0.885180
SNP_A-4192498
AB
0.042969
5.593
0.409664
0.463710
SNP_A-1780732
BB
0.015625
13.202
0.000000
0.066614
SNP_A-1780848
AB
0.007813
15.919
0.536667
0.615157
SNP_A-1780985
BB
0.007813
14.292
0.000000
0.000000
SNP_A-1781022
AA
0.007813
11.075
0.919411
1.000000
SNP_A-1781076
BB
0.023438
21.529
0.172000
0.000000
SNP_A-1781249
AB
0.007813
11.934
0.587002
0.490558
SNP_A-1781276
AA
0.007813
14.460
1.000000
1.000000
SNP_A-1781302
BB
0.007813
20.008
0.003356
0.000000
SNP_A-1781510
AA
0.007813
28.799
0.958413
0.993679
SNP_A-4192564
BB
0.007813
12.574
0.050360
0.065056
SNP_A-1781614
AA
0.007813
24.017
1.000000
0.929032
SNP_A-1781633
AA
0.007813
22.710
0.992977
1.000000
SNP_A-1781764
AB
0.007813
16.096
0.528183
0.390187
SNP_A-1781829
AA
0.023438
21.590
0.950855
1.000000
Total number of rows:
262264
Table truncated, full table size
12986 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116912.CEL.gz
40.7 Mb
(ftp)
(http)
CEL
GSM116912.raw.txt.gz
24.1 Mb
(ftp)
(http)
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