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GEO accession:
Sample GSM116982
Query DataSets for GSM116982
Status
Public on Sep 30, 2006
Title
NA12874_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA12874
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12874
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
17.368
0.127992
0.000000
SNP_A-1780618
AA
0.062500
6.937
0.713205
0.876831
SNP_A-1780632
AB
0.132813
6.784
0.782609
0.579003
SNP_A-1780654
AA
0.007813
24.727
1.000000
0.983496
SNP_A-4192495
AB
0.250000
3.233
0.336364
0.374769
SNP_A-4192498
BB
0.000488
10.366
0.000000
0.000000
SNP_A-1780732
BB
0.046875
12.355
0.000000
0.145299
SNP_A-1780848
AB
0.007813
13.278
0.548059
0.533088
SNP_A-1780985
AA
0.023438
12.385
1.000000
0.909509
SNP_A-1781022
AA
0.062500
5.172
0.950368
0.686047
SNP_A-1781076
BB
0.039063
16.631
0.317766
0.000000
SNP_A-1781249
AA
0.007813
14.738
1.000000
0.920912
SNP_A-1781276
AB
0.007813
5.547
0.532727
0.502469
SNP_A-1781302
BB
0.039063
11.697
0.205927
0.072787
SNP_A-1781510
AA
0.007813
20.967
0.973296
1.000000
SNP_A-4192564
BB
0.023438
7.729
0.028932
0.269097
SNP_A-1781614
AA
0.007813
17.063
1.000000
0.832270
SNP_A-1781633
AA
0.007813
21.151
1.000000
1.000000
SNP_A-1781764
BB
0.007813
15.637
0.060396
0.049261
SNP_A-1781829
AA
0.062500
12.371
0.960864
0.791076
Total number of rows:
262264
Table truncated, full table size
12938 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116982.CEL.gz
43.7 Mb
(ftp)
(http)
CEL
GSM116982.raw.txt.gz
26.5 Mb
(ftp)
(http)
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