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GEO accession:
Sample GSM116983
Query DataSets for GSM116983
Status
Public on Sep 30, 2006
Title
NA12875_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA12875
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12875
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
15.567
0.000000
0.000000
SNP_A-1780618
BB
0.007813
11.329
0.000000
0.000000
SNP_A-1780632
AA
0.007813
15.233
1.000000
0.877729
SNP_A-1780654
AA
0.007813
22.864
1.000000
0.967042
SNP_A-4192495
AB
0.093750
2.860
0.572917
0.427273
SNP_A-4192498
BB
0.330078
3.415
0.119171
0.375527
SNP_A-1780732
BB
0.031250
3.130
0.000000
0.201667
SNP_A-1780848
BB
0.250000
2.608
0.023312
0.280822
SNP_A-1780985
AA
0.007813
12.198
1.000000
0.931373
SNP_A-1781022
AA
0.007813
9.956
1.000000
1.000000
SNP_A-1781076
AA
0.023438
14.569
1.000000
0.895402
SNP_A-1781249
AA
0.007813
8.936
0.967188
0.939050
SNP_A-1781276
AB
0.039063
6.186
0.536984
0.457868
SNP_A-1781302
BB
0.132813
10.933
0.175000
0.040639
SNP_A-1781510
AA
0.007813
17.579
0.956067
1.000000
SNP_A-4192564
BB
0.062500
6.554
0.058824
0.291188
SNP_A-1781614
AA
0.023438
18.962
0.996416
0.917837
SNP_A-1781633
AA
0.007813
17.777
1.000000
1.000000
SNP_A-1781764
BB
0.007813
13.987
0.058658
0.000000
SNP_A-1781829
AA
0.093750
7.247
0.927099
0.859013
Total number of rows:
262264
Table truncated, full table size
12937 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116983.CEL.gz
42.1 Mb
(ftp)
(http)
CEL
GSM116983.raw.txt.gz
25.2 Mb
(ftp)
(http)
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