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GEO accession:
Sample GSM117080
Query DataSets for GSM117080
Status
Public on Sep 30, 2006
Title
NA18944_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA18944
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18944
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
19.559
0.000000
0.000000
SNP_A-1780618
BB
0.007813
13.550
0.000000
0.016189
SNP_A-1780632
AA
0.007813
10.375
1.000000
0.877261
SNP_A-1780654
AA
0.007813
20.664
0.974820
0.994638
SNP_A-4192495
AB
0.015625
5.985
0.403017
0.422425
SNP_A-4192498
BB
0.000488
18.685
0.000000
0.000000
SNP_A-1780732
BB
0.015625
16.599
0.000000
0.035230
SNP_A-1780848
BB
0.023438
8.141
0.000000
0.142751
SNP_A-1780985
AA
0.007813
23.905
1.000000
1.000000
SNP_A-1781022
AA
0.007813
8.461
0.943210
1.000000
SNP_A-1781076
AB
0.007813
11.013
0.600548
0.561254
SNP_A-1781249
AA
0.007813
4.303
0.960908
0.860397
SNP_A-1781276
AB
0.078125
4.235
0.541702
0.390063
SNP_A-1781302
AB
0.023438
13.944
0.665493
0.548397
SNP_A-1781510
AA
0.007813
32.577
0.954242
1.000000
SNP_A-4192564
BB
0.023438
15.160
0.000000
0.043118
SNP_A-1781614
AA
0.007813
19.188
0.993769
0.909335
SNP_A-1781633
AB
0.015625
14.032
0.477105
0.508535
SNP_A-1781764
AA
0.007813
14.760
0.990734
0.898496
SNP_A-1781829
AA
0.007813
8.841
0.942817
0.851412
Total number of rows:
262264
Table truncated, full table size
12972 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117080.CEL.gz
42.4 Mb
(ftp)
(http)
CEL
GSM117080.raw.txt.gz
25.5 Mb
(ftp)
(http)
TXT
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