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GEO accession:
Sample GSM117085
Query DataSets for GSM117085
Status
Public on Sep 30, 2006
Title
NA18951_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18951
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18951
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
22.328
0.000000
0.024221
SNP_A-1780618
AB
0.023438
7.952
0.321875
0.437500
SNP_A-1780632
AB
0.023438
13.684
0.593525
0.508772
SNP_A-1780654
AA
0.007813
17.656
0.979458
0.942356
SNP_A-4192495
BB
0.007813
14.191
0.015038
0.000000
SNP_A-4192498
AB
0.266602
2.343
0.182990
0.466443
SNP_A-1780732
AB
0.046875
2.451
0.611979
0.608310
SNP_A-1780848
BB
0.039063
10.802
0.000000
0.277647
SNP_A-1780985
AB
0.007813
5.562
0.556202
0.573171
SNP_A-1781022
AB
0.187500
2.645
0.462963
0.451219
SNP_A-1781076
BB
0.062500
13.351
0.208791
0.037946
SNP_A-1781249
AA
0.007813
15.245
1.000000
0.859079
SNP_A-1781276
AA
0.062500
11.487
0.979540
0.868990
SNP_A-1781302
AB
0.007813
15.323
0.566781
0.528455
SNP_A-1781510
AA
0.007813
27.324
0.967464
1.000000
SNP_A-4192564
BB
0.093750
6.345
0.014806
0.125000
SNP_A-1781614
AB
0.007813
8.715
0.621277
0.626923
SNP_A-1781633
AB
0.023438
13.877
0.466346
0.419492
SNP_A-1781764
AB
0.007813
11.574
0.440519
0.405660
SNP_A-1781829
AA
0.007813
13.795
0.976109
0.934385
Total number of rows:
262264
Table truncated, full table size
12954 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117085.CEL.gz
40.1 Mb
(ftp)
(http)
CEL
GSM117085.raw.txt.gz
23.5 Mb
(ftp)
(http)
TXT
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