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GEO accession:
Sample GSM117101
Query DataSets for GSM117101
Status
Public on Sep 30, 2006
Title
NA18969_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18969
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18969
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
15.605
0.110218
0.000000
SNP_A-1780618
AA
0.023438
12.689
0.981443
0.956722
SNP_A-1780632
AB
0.093750
10.106
0.551852
0.568440
SNP_A-1780654
AA
0.007813
23.603
0.988174
1.000000
SNP_A-4192495
AB
0.007813
7.026
0.411578
0.395256
SNP_A-4192498
AB
0.126953
3.109
0.278803
0.439752
SNP_A-1780732
AB
0.015625
4.523
0.478425
0.445943
SNP_A-1780848
AB
0.007813
16.841
0.515698
0.599375
SNP_A-1780985
AB
0.007813
6.644
0.462397
0.482312
SNP_A-1781022
BB
0.132813
6.639
0.000000
0.266667
SNP_A-1781076
AA
0.007813
24.542
0.937426
1.000000
SNP_A-1781249
AA
0.039063
13.886
1.000000
0.827686
SNP_A-1781276
AA
0.132813
5.809
0.765877
0.889425
SNP_A-1781302
BB
0.007813
14.513
0.165289
0.052053
SNP_A-1781510
AB
0.062500
4.857
0.655288
0.754249
SNP_A-4192564
BB
0.062500
11.353
0.000735
0.000000
SNP_A-1781614
BB
0.023438
5.298
0.107557
0.128981
SNP_A-1781633
AA
0.007813
17.660
1.000000
1.000000
SNP_A-1781764
AA
0.093750
3.235
0.928932
0.751216
SNP_A-1781829
AA
0.039063
11.139
0.934194
0.847425
Total number of rows:
262264
Table truncated, full table size
12982 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117101.CEL.gz
45.1 Mb
(ftp)
(http)
CEL
GSM117101.raw.txt.gz
27.8 Mb
(ftp)
(http)
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