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GEO accession:
Sample GSM117130
Query DataSets for GSM117130
Status
Public on Sep 30, 2006
Title
NA19094_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA19094
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19094
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
AB
0.007813
6.912
0.519874
0.562893
SNP_A-1780618
AB
0.007813
8.471
0.511111
0.475845
SNP_A-1780632
AA
0.007813
20.217
1.000000
0.933649
SNP_A-1780654
AB
0.007813
18.507
0.515374
0.512015
SNP_A-4192495
BB
0.015625
10.759
0.000000
0.000000
SNP_A-4192498
BB
0.000488
12.755
0.000000
0.000000
SNP_A-1780732
BB
0.015625
13.744
0.000000
0.000000
SNP_A-1780848
AB
0.023438
15.144
0.511936
0.597122
SNP_A-1780985
AB
0.132813
6.176
0.621995
0.518340
SNP_A-1781022
AA
0.007813
12.805
0.990433
1.000000
SNP_A-1781076
BB
0.039063
18.032
0.226950
0.000000
SNP_A-1781249
BB
0.007813
14.133
0.000000
0.000000
SNP_A-1781276
AB
0.039063
7.022
0.501550
0.593368
SNP_A-1781302
BB
0.007813
12.094
0.193548
0.054315
SNP_A-1781510
AA
0.007813
27.465
0.993844
1.000000
SNP_A-4192564
BB
0.007813
7.723
0.000000
0.140871
SNP_A-1781614
AA
0.007813
24.955
1.000000
0.969646
SNP_A-1781633
AA
0.007813
22.279
1.000000
1.000000
SNP_A-1781764
AB
0.007813
12.470
0.535188
0.422008
SNP_A-1781829
AB
0.007813
14.110
0.528920
0.457543
Total number of rows:
262264
Table truncated, full table size
12953 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117130.CEL.gz
44.2 Mb
(ftp)
(http)
CEL
GSM117130.raw.txt.gz
13.3 Mb
(ftp)
(http)
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