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GEO accession:
Sample GSM117178
Query DataSets for GSM117178
Status
Public on Sep 30, 2006
Title
NA19194_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA19194
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA19194
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
10.138
0.168376
0.000000
SNP_A-1780618
BB
0.007813
21.952
0.000000
0.049257
SNP_A-1780632
AB
0.312500
4.089
0.816444
0.442555
SNP_A-1780654
AB
0.007813
15.601
0.515260
0.528426
SNP_A-4192495
BB
0.023438
8.453
0.000000
0.002749
SNP_A-4192498
AB
0.016602
7.154
0.413580
0.445911
SNP_A-1780732
BB
0.015625
13.136
0.000000
0.068718
SNP_A-1780848
BB
0.093750
4.061
0.004127
0.242015
SNP_A-1780985
BB
0.007813
9.432
0.000000
0.000000
SNP_A-1781022
AA
0.015625
6.574
1.000000
0.992254
SNP_A-1781076
AB
0.023438
4.910
0.583333
0.493594
SNP_A-1781249
AB
0.039063
9.776
0.568182
0.448019
SNP_A-1781276
AB
0.039063
8.188
0.545161
0.600000
SNP_A-1781302
BB
0.007813
11.850
0.091192
0.019147
SNP_A-1781510
AA
0.007813
19.172
0.952324
1.000000
SNP_A-4192564
AB
0.132813
3.382
0.511433
0.241985
SNP_A-1781614
AA
0.007813
18.324
1.000000
0.887731
SNP_A-1781633
AA
0.007813
19.375
0.977429
1.000000
SNP_A-1781764
BB
0.007813
12.711
0.049776
0.050285
SNP_A-1781829
AB
0.007813
15.248
0.495182
0.471496
Total number of rows:
262264
Table truncated, full table size
12949 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117178.CEL.gz
44.9 Mb
(ftp)
(http)
CEL
GSM117178.raw.txt.gz
13.5 Mb
(ftp)
(http)
TXT
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