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GEO accession:
Sample GSM117545
Query DataSets for GSM117545
Status
Public on Sep 30, 2006
Title
NA12239_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 3
Biomaterial provider
Coriell NA12239
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12239
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 30, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
16.833
0.040373
0.000000
SNP_A-1780618
AB
0.250000
2.295
0.392045
0.362205
SNP_A-1780632
AB
0.078125
4.529
0.726178
0.580972
SNP_A-1780654
AA
0.007813
21.158
1.000000
1.000000
SNP_A-4192495
AA
0.007813
5.620
1.000000
0.896923
SNP_A-4192498
AB
0.106445
4.308
0.310526
0.487280
SNP_A-1780732
AB
0.015625
7.955
0.564246
0.451192
SNP_A-1780848
BB
0.062500
13.699
0.022727
0.199422
SNP_A-1780985
AB
0.007813
4.067
0.518519
0.393617
SNP_A-1781022
AA
0.015625
9.907
1.000000
1.000000
SNP_A-1781076
BB
0.062500
6.642
0.232824
0.000000
SNP_A-1781249
AA
0.007813
7.945
1.000000
0.861165
SNP_A-1781276
BB
0.007813
12.350
0.012367
0.000000
SNP_A-1781302
BB
0.007813
10.241
0.119048
0.000000
SNP_A-1781510
AA
0.007813
27.018
1.000000
1.000000
SNP_A-4192564
BB
0.039063
10.999
0.016272
0.072727
SNP_A-1781614
AB
0.007813
13.121
0.654731
0.578212
SNP_A-1781633
AA
0.007813
19.499
1.000000
0.916667
SNP_A-1781764
BB
0.039063
14.960
0.048724
0.031353
SNP_A-1781829
AA
0.007813
12.355
0.986814
0.867760
Total number of rows:
262264
Table truncated, full table size
12938 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117545.CEL.gz
39.6 Mb
(ftp)
(http)
CEL
GSM117545.raw.txt.gz
23.3 Mb
(ftp)
(http)
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