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Sample GSM117720 Query DataSets for GSM117720
Status Public on Jul 07, 2006
Title Colon - 174938
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 47
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Jun 30, 2006
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2285.3 P 0.000509
AFFX-BioB-M_at 3297.3 P 0.000044
AFFX-BioB-3_at 1857.8 P 0.000044
AFFX-BioC-5_at 5873.5 P 0.000052
AFFX-BioC-3_at 6570.2 P 0.000044
AFFX-BioDn-5_at 14279.5 P 0.000044
AFFX-BioDn-3_at 22210.2 P 0.000044
AFFX-CreX-5_at 75116.8 P 0.000052
AFFX-CreX-3_at 79939.7 P 0.000044
AFFX-DapX-5_at 3197.1 P 0.000060
AFFX-DapX-M_at 5411.6 P 0.000195
AFFX-DapX-3_at 6084.6 P 0.000052
AFFX-LysX-5_at 334.6 P 0.000052
AFFX-LysX-M_at 528.7 P 0.006871
AFFX-LysX-3_at 927.2 P 0.000095
AFFX-PheX-5_at 437.9 P 0.000110
AFFX-PheX-M_at 622.2 P 0.000225
AFFX-PheX-3_at 819.7 P 0.000095
AFFX-ThrX-5_at 840.2 P 0.000095
AFFX-ThrX-M_at 1024.8 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1473 Kbytes.




Supplementary file Size Download File type/resource
GSM117720.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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