|
| Status |
Public on Aug 26, 2013 |
| Title |
patid_236 [27K] |
| Sample type |
genomic |
| |
|
| Source name |
glioma
|
| Organism |
Homo sapiens |
| Characteristics |
os (years): 11.19
os event: alive
pfs (years): 11.19
pfs event: no prog
cimp: CIMP+
igs: 9
idh1: mut
1p19qloh: LOH
egfr: wt
mgmt: meth
or diagn: AOD
rev diagn: AOD
surgery: 3
age: 32
Sex: M
tum loc: 1
perf: 0
trt: RT
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was isolated from 5-40 cryostat sections of 40 μm thickness using the QIAamp DNA mini kit
|
| Label |
Cy5 and Cy20
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
glioma
|
| Data processing |
Beadstudio. The 'non-normalized.txt' data matrix contains Unmethylated (Signal A) and methylated (signal B) signal intensities.
|
| |
|
| Submission date |
Jul 01, 2013 |
| Last update date |
Aug 26, 2013 |
| Contact name |
Pim French |
| E-mail(s) |
p.french@erasmusmc.nl
|
| Phone |
+31 10 70443 33
|
| Organization name |
Erasmus MC
|
| Department |
Neurology
|
| Lab |
Neurooncology
|
| Street address |
Dr Molewaterplein 50
|
| City |
Rotterdam |
| ZIP/Postal code |
2040CA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL8490 |
| Series (2) |
| GSE48460 |
MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951 [27K] |
| GSE48462 |
MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951 |
|
