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Sample GSM11821 Query DataSets for GSM11821
Status Public on May 10, 2004
Title GC2_TAQ100F2_3hr Mitomycin C_2d668_2
Sample type genomic
 
Channel 1
Source name TAQ100F2 3hr Mitomycin C gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name TAQ100F2 3hr untreated gDNA
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description TAQ100F2 treated with 2ug/mL Mitomycin C for 3hrs compared to 3hr untreated TAQ100F2 gDNA.
User - FBlackmer
Date_of_Scan = Wed Feb 12 10:57:24 2003
 
Submission date Oct 20, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE818 TAQ100F2_mitomycinC_2ug/ml_DNA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2400 21970 7537.421875 20.102942 7636.942871 86.909996 172.054718 19200 25.436762 0.945713 0.758972 0.996872 86.726754 0.839315 9652.175781 56.220589 10452.53418 156.305267 181.42009 20500 25.436762 0.946029 0.658264 0.995415 61.752083 0.752302 1 1 1 1 1 1 1 1 1 0 1 1 1 7517.318933 9595.955192 0.049900186 0.051671207 0.965725192 -0.015146439
2 2650 21970 1426.956787 2.764706 1014.657166 22.798349 166.60321 13900 25.436762 0.889124 0.969688 1 62.590355 0.878903 2834.025391 56.35294 2015.429199 161.159119 180.89296 15700 25.436762 0.941204 0.951782 0.994392 17.585262 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 1424.192081 2777.672451 0.009453829 0.014956894 0.632071678 -0.199233669
3 2900 21970 7450.226563 19.705883 4911.70752 86.619781 172.054718 17200 25.436762 0.912441 0.884171 0.996742 86.010683 0.868991 9373.291016 48.941177 7953.333008 152.739151 183.339935 20600 25.436762 0.962092 0.833397 0.995506 61.367966 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 7430.52068 9324.349839 0.049324017 0.050208697 0.982379936 -0.007720516
4 3150 21970 3091.949707 14.029411 1854.444824 54.521519 152.852707 15900 25.436762 0.928923 0.953278 0.99836 56.710631 0.903904 5103.856445 33.911766 3685.489502 108.816254 178.233932 18800 25.436762 0.929308 0.919327 0.99559 46.903438 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 3077.920296 5069.944679 0.020431326 0.027300061 0.748398563 -0.125867055
5 3400 21970 6217.305664 48.308823 4111.054688 218.540283 164.488129 18000 25.436762 0.903343 0.900909 0.995056 28.449243 0.882749 9476.516602 50.308823 6373.790039 125.291092 172.977264 18400 25.436762 0.929984 0.863243 0.996246 75.635997 0.867314 1 1 1 1 1 1 1 1 1 1 1 1 1 6168.996841 9426.207779 0.040949984 0.05075717 0.806782251 -0.093243665
6 3650 21970 4908.896973 26.647058 3155.157715 94.729744 170.941086 17500 25.436762 0.907855 0.926498 0.997253 51.820017 0.871016 7505.599121 62.14706 5468.440918 131.657425 181.42009 19200 25.436762 0.950516 0.878677 0.996452 57.008552 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 4882.249915 7443.452061 0.03240852 0.040080653 0.808582629 -0.092275593
7 3890 21970 5233.694336 10.808824 3733.935791 64.322472 177.876389 18000 18.141899 0.95517 0.910568 0.998886 81.366499 0.858407 7115.015137 19.044117 5758.71875 63.33456 186.097076 20000 18.141899 0.953729 0.880096 0.998222 112.340168 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 5222.885512 7095.97102 0.034669669 0.038209577 0.907355485 -0.042222531
8 4140 21980 5060.494141 16.882353 3396.485107 76.659851 173.161194 17800 11.790098 0.920179 0.919052 0.998047 66.012314 0.86698 7010.874512 27.470589 5138.452148 77.31974 182.64415 19100 11.790098 0.945883 0.889427 0.997681 90.673798 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 5043.611788 6983.403923 0.033479645 0.037603438 0.890334668 -0.050446715
9 4390 21980 4436.87793 7.411765 2867.826416 26.977734 170.941086 17200 11.790098 0.923138 0.931198 0.999077 164.464443 0.871016 5994.430664 72.647057 4841.59668 177.094437 175.353195 20200 11.790098 0.917088 0.898689 0.994362 33.84878 0.862994 1 1 1 1 1 1 1 1 1 1 1 1 1 4429.466165 5921.783607 0.029402928 0.031886946 0.922099213 -0.035222349
10 4640 21980 3170.305664 8.647058 2284.670898 29.094168 169.632599 18000 11.790098 0.914656 0.945244 0.998863 108.967051 0.873395 5069.945313 50.955883 4209.333008 130.120193 178.233932 20200 11.790098 0.913618 0.897758 0.996544 38.963555 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 3161.658606 5018.98943 0.020987184 0.027025683 0.776564419 -0.109822512
11 4900 21970 4755.552246 3.632353 3592.148193 19.355978 176.799423 19200 25.436762 0.920916 0.917358 0.999756 245.68907 0.860365 6953.723633 80.044121 5514.682617 173.665527 181.244553 19900 25.436762 0.928468 0.875473 0.995148 40.040898 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 4751.919893 6873.679512 0.031543385 0.037012607 0.852233551 -0.069441372
12 5140 21980 2210.25415 44.470589 1384.575439 125.60878 173.34491 17700 11.790098 0.920247 0.960854 0.995995 17.596335 0.866646 3827.179199 45.029411 2969.342041 129.453964 186.097076 21200 11.790098 0.94901 0.932808 0.996193 29.564017 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 2165.783561 3782.149788 0.014376536 0.02036569 0.705919411 -0.151244876
13 5400 21990 6763.483887 32.205883 4404.858398 109.417664 170.194611 18400 21.605202 0.929585 0.898949 0.996811 61.813456 0.872373 10311.96582 25.117647 8157.956055 60.689945 179.834061 20700 21.605202 0.949218 0.831085 0.998283 169.912261 0.854847 1 1 1 1 1 1 1 1 1 1 1 1 1 6731.278004 10286.84817 0.044682423 0.055391449 0.806666448 -0.093306007
14 5650 21990 3449.57959 14.911765 2380.727295 71.196747 177.876389 17600 21.605202 0.942695 0.942146 0.997101 48.451365 0.858407 5411.571289 63.617645 4509.848633 130.791855 186.268051 20300 21.605202 0.962917 0.902634 0.99688 41.375446 0.843149 1 1 1 1 1 1 1 1 1 1 1 1 1 3434.667825 5347.953644 0.022799427 0.028797052 0.791727816 -0.101424096
15 5900 21990 9142.452148 27.470589 6704.326172 80.318672 177.697342 21000 21.605202 0.941525 0.860336 0.997643 113.827232 0.858732 11762.25391 70.117645 9998.243164 201.322678 188.307541 24000 21.605202 0.957595 0.794899 0.994247 58.424883 0.839441 1 1 1 1 1 1 1 1 1 1 1 1 1 9114.981559 11692.13626 0.060505518 0.062958484 0.961038359 -0.017259278
16 6140 21990 4768.125 20.264706 3128.517822 80.141777 169.068726 17600 12.201818 0.927621 0.924225 0.996704 59.496123 0.874421 8113.860352 89.176468 6488.779785 182.199417 183.860046 21500 12.201818 0.943443 0.86586 0.995018 44.532856 0.847527 1 1 1 1 1 1 1 1 1 1 1 1 1 4747.860294 8024.683884 0.031516438 0.043210404 0.729371508 -0.137051206
17 6390 21990 2804.608887 24.161764 2104.622559 73.551407 178.768906 17900 12.201818 0.950034 0.951332 0.997551 38.131275 0.856784 4591.217773 55.161766 4036.46875 109.053543 186.779999 21100 12.201818 0.96118 0.905319 0.997093 42.100583 0.842218 1 1 1 1 1 1 1 1 1 1 1 1 1 2780.447123 4536.056007 0.018456691 0.024425238 0.755640154 -0.121684972
18 6640 22000 3973.241943 26.57353 2574.567627 103.406647 177.159134 18600 18.941021 0.904797 0.94072 0.998146 38.423468 0.859711 6316.258789 66.205879 5219.486816 139.249756 187.120529 22800 18.941021 0.959887 0.889015 0.996452 45.359209 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 3946.668413 6250.05291 0.026198102 0.033654573 0.778441072 -0.108774258
19 2390 22210 3267.849121 22.220589 2267.702148 104.166031 172.424332 15900 26.818848 0.935754 0.943695 0.996063 31.371543 0.868319 4524.466309 14.338235 3512.658936 49.158474 187.799744 17800 26.818848 0.957392 0.91217 0.998253 92.03838 0.840364 1 1 1 1 1 1 1 1 1 1 1 1 1 3245.628532 4510.128074 0.021544579 0.024285624 0.887132998 -0.052011266
20 2640 22220 5006.353516 32.029411 3772.958496 95.641113 149.483643 14700 18.141899 0.896105 0.913147 0.996773 52.345203 0.91003 6894.755371 36.926472 6460.422363 100.609085 177.33873 18000 18.141899 0.931551 0.860741 0.996521 68.530147 0.859384 1 1 1 1 1 1 1 1 1 1 1 1 1 4974.324105 6857.828899 0.033019711 0.036927256 0.89418263 -0.048573771

Total number of rows: 5184

Table truncated, full table size 1740 Kbytes.




Supplementary data files not provided
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