|
Status |
Public on Dec 21, 2013 |
Title |
Animal-blastomeres_rep2 |
Sample type |
RNA |
|
|
Source name |
Animal Blastomeres
|
Organism |
Xenopus laevis |
Characteristics |
developmental stage: 8-cell embryos tissue: animal blastomeres
|
Treatment protocol |
Jelly coat was removed by incubation at room temp. in 2% cysteine, pH 8.0 for 4 minutes, and fixed in 98% ethanol, 2% acetic acid for dissections.
|
Growth protocol |
Embryos were collected after hormone-induced natural matings of 2-pairs of adult Xenopus laevis,
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with the RNeasy mini kit (Qiagen) using manufacturer's instructions.
|
Label |
biotin
|
Label protocol |
Total RNAs were labeled and fragmented with the Ovation Biotin RNA Amplification and Labeling System (NuGEN Technologies, Inc.) according to standard protocol.
|
|
|
Hybridization protocol |
The labeled cDNAs were purified with the Dye Ex kit (Qiagen), and shipped to the NINDS-NIMH Microarray Consortium at The Translational Genomics Research Institute (T-GEN, Tempe, AZ).
|
Scan protocol |
The chips were washed and scanned as recommended by the Ovation Biotin RNA Amplification and Labeling System User Guide (version 1.0).
|
Description |
NIH-Moody-A2-Xen Maternally deposited RNAs present in animal blastomeres
|
Data processing |
GCOS software was used to determine signal intensities and detection calls for each gene. Please note that the data was processed by a service facility, who no longer exists. Thus, the submitter is not sure about software version or algorithm used for processing.
|
|
|
Submission date |
Jul 10, 2013 |
Last update date |
Dec 22, 2013 |
Contact name |
Sally A. Moody |
E-mail(s) |
samoody@gwu.edu
|
Phone |
2029942878
|
Organization name |
The George Washington University School of Medicine and Health Sciences
|
Department |
Anatomy and Regenerative Biology
|
Lab |
Moody
|
Street address |
2300 I St. NW
|
City |
Washington |
State/province |
DC |
ZIP/Postal code |
20037 |
Country |
USA |
|
|
Platform ID |
GPL10756 |
Series (1) |
GSE48659 |
Comparison of animal-blastomeres' RNA content to vegetal-most half of vegetal blastomeres' RNA content at the 8-cell stage of Xenopus laevis embryos to identify animal-enriched transcripts |
|