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Sample GSM11901 Query DataSets for GSM11901
Status Public on Apr 16, 2004
Title ZR-75-1, 12h, 3.0mM 5FU C
Sample type RNA
 
Channel 1
Source name pooled reference mRNA from 4 harvests of ZR-75-1 cells
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name mRNA from "ZR-75-1, 12h, 3.0mM 5FU C"
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen
 
Submission date Oct 21, 2003
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) cperou@med.unc.edu
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Platform ID GPL550
Series (2)
GSE763 Cell-type specific responses to chemotherapeutics in breast cancer
GSE1647 Prediction of toxicant-specific gene expression signatures following chemotherapeutic treatment of breast cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SPOT spot number on array
CH1_MEAN channel 1 mean intensity
CH1_SD standard deviation of channel 1 intensity
CH1_BKD_MEDIAN channel 1 background median intensity
CH1_BKD_SD standard deviation of channel 1 background median intensity
CH2_MEAN channel 2 mean intensity
CH2_SD standard deviation of channel 2 intensity
CH2_BKD_MEDIAN channel 2 background median intensity
CH2_BKD_SD standard deviation of channel 2 background median intensity
TOT_BPIX number of background pixels
TOT_SPIX number of spot pixels
CH2BN_MEDIAN channel 2 normalized background median intensity
CH2IN_MEAN channel 2 normalized mean intensity
CH1DL_MEAN channel 1 Lowess_normalized mean intensity
CH2DL_MEAN channel 2 Lowess_normalized mean intensity
LOG_RAT2N_MEAN log2_ratio of (CH2IN_MEAN - CH2BN_MEDIAN) over (CH1_MEAN - CH1_BKD_MEDIAN), CH2IN_MEAN and CH2BN_MEDIAN are global-normalized intensities
CORR correlation coefficient among pixels
FLAG Spot flag. 0:not flagged; negative:flagged as bad spots; positive:flagged as good spots
CONTROL Y: control gene; N: not control
UNF_VALUE LOG_RAT2L_MEAN; log2_ratio of CH2DL_MEAN over CH1DL_MEAN

Data table
ID_REF VALUE SPOT CH1_MEAN CH1_SD CH1_BKD_MEDIAN CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_MEDIAN CH2_BKD_SD TOT_BPIX TOT_SPIX CH2BN_MEDIAN CH2IN_MEAN CH1DL_MEAN CH2DL_MEAN LOG_RAT2N_MEAN CORR FLAG CONTROL UNF_VALUE
1 -.198 4357 123 53 90 24 116 65 93 60 265 208 101 126 30 26 -.4 .17 0 N -.198
2 3253 292 170 304 127 450 774 411 199 179 208 446 489 .08 -100 N
3 .484 4360 118 43 86 21 126 85 89 50 264 208 96 136 29 41 .322 .23 0 N .484
4 3256 291 127 262 301 586 2879 355 374 179 208 385 636 28 241 3.114 .2 -100 N 3.112
5 -.04 4363 138 53 91 23 128 75 89 50 264 208 96 139 43 42 -.128 .37 0 N -.04
6 3259 695 625 228 68 701 527 317 139 179 208 344 761 463 387 -.163 .71 -100 N -.259
7 .455 4366 558 471 104 51 719 589 109 87 264 208 118 781 449 616 .546 .72 0 N .455
8 3262 324 139 298 271 415 216 416 286 179 208 452 451 .51 -100 N
9 8773 81 20 84 18 80 37 90 50 172 208 97 86 -1 0 N
10 7669 93 25 89 24 90 43 99 52 179 208 107 97 -1 0 N
11 8776 88 24 87 22 87 46 91 42 179 208 98 94 .03 0 N
12 1.06 7672 147 65 90 23 210 145 101 50 179 208 109 228 55 114 1.062 .52 0 N 1.06
13 -1.083 8779 133 58 88 27 114 65 97 48 179 208 105 123 40 19 -1.322 .17 0 N -1.083
14 -.143 7675 117 44 90 46 119 58 100 94 179 208 108 129 24 22 -.362 .34 0 N -.143
15 -.608 8782 232 130 89 20 174 101 85 44 179 208 92 189 139 91 -.561 .52 0 N -.608
16 -.441 7678 111 37 89 26 112 58 100 46 179 208 108 121 19 14 -.759 .05 0 N -.441
17 -1.02 13189 3115 2316 95 37 1449 1074 92 49 179 208 100 1575 2883 1422 -1.035 .9 0 N -1.02
18 -1.163 12085 110 32 88 27 102 51 95 55 179 208 103 110 19 8 -1.653 .23 0 N -1.163
19 -.539 13192 13384 9624 97 49 7406 5397 92 51 179 208 100 8050 11882 8179 -.742 .91 0 N -.539
20 -1.558 12088 237 202 90 23 144 87 98 51 179 208 106 156 141 48 -1.556 .15 0 N -1.558

Total number of rows: 20163

Table truncated, full table size 1664 Kbytes.




Supplementary data files not provided
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