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GEO accession:
Sample GSM119455
Query DataSets for GSM119455
Status
Public on Nov 01, 2006
Title
Ethylbenzene 2ndEtcy3Pycy5
Sample type
RNA
Channel 1
Source name
experiment
Organism
Rhodococcus jostii RHA1
Characteristics
experiment
Extracted molecule
total RNA
Label
cy3
Channel 2
Source name
control
Organism
Rhodococcus jostii RHA1
Characteristics
control
Extracted molecule
total RNA
Label
cy5
Description
ehtylbenze vs. pyruvate
Data processing
Normalized log ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)
Submission date
Jul 09, 2006
Last update date
Nov 01, 2006
Contact name
Michael McLeod
Fax
604-822-6041
Organization name
University of British Columbia
Department
Microbiology & Immunology
Lab
Mohn
Street address
4506 - 2350 Health Sciences Mall
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V6T 1Z3
Country
Canada
Platform ID
GPL3918
Series (2)
GSE5269
Effects of ethylbenzene on Rhodococcus sp. RHA1
GSE5280
Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1
Data table header descriptions
ID_REF
VALUE
log2 ratio of means defined as CH1 divided by CH2 log(CH1/CH2)
Experiment Signal Mean
Experiment Background
Control Signal Mean
Control Background Mean
RATIO
Normalized ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)
Data table
ID_REF
VALUE
Experiment Signal Mean
Experiment Background
Control Signal Mean
Control Background Mean
RATIO
1
0.879077560900964186
116.36585365853658
112.03809523809524
48.31111111111111
46.46349206349206
2.34234347498113461
2
0.546445422306039393
219.13888888888889
113.85416666666667
126.88235294117646
47.265517241379314
1.32239269869011477
3
0.669852129270395337
219.94444444444446
112.99652777777777
112.56410256410257
46.94385964912281
1.62980068216499496
4
0.839356136669321752
112.04
110.1910447761194
48.4
47.4984802431611
2.05093145197815676
5
0.869793813327875215
118.08
108.65930599369085
49.48
47.77917981072555
5.53891238222419495
6
0.839411497953334695
111.36290322580645
108.89908256880734
48.104838709677416
48.105990783410135
-2138.59633027503065
7
0.809968131041319022
114.28
109.38485804416403
50.84
48.93375394321767
2.56794863308401082
8
0.801553717613887847
114.38620689655173
110.8
51.317241379310346
51.280851063829786
98.5483870967678351
9
0.851841692191612147
124.17777777777778
115.25102880658436
52.977777777777774
51.958847736625515
8.76090468497580927
10
0.810393303451752687
116.375
110.95161290322581
51.75
50.04838709677419
3.18720379146918558
11
0.85494411732650566
117.28
109.00281690140845
49.88
47.780281690140846
3.94204453984438094
12
0.827060735963798704
110.87586206896552
111.48290598290598
48.48965517241379
48.13793103448276
-1.72590916708564357
13
0.868895820302057629
118.46875
111.20060790273556
49.6875
49.015197568389056
10.8108222661768614
14
0.828985379282382946
119.04
109.2338028169014
51.96
49.53239436619718
4.0394523091204439
15
0.834328090030179395
118.48
111.05362776025237
51.44
49.48264984227129
3.79409489427539107
16
0.943430680914492936
132.96
117.06309148264984
51.76
49.662460567823345
7.57883655176563119
17
0.890774416305321324
138.52
125.01892744479495
56.84
53.27444794952682
3.78653077113636285
18
0.791321744827952444
145.44
130.37792642140468
65.92
56.735785953177256
1.63999592145895237
19
0.824052751106800363
130.4
127.70967741935483
57.2
54.562724014336915
1.02011416145691995
20
0.85952653677570331
134.6888888888889
121.4169014084507
57.022222222222226
54.222535211267605
4.74052543320290466
Total number of rows:
22080
Table truncated, full table size
2464 Kbytes
.
Supplementary data files not provided
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