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Sample GSM119461 Query DataSets for GSM119461
Status Public on Nov 01, 2006
Title Benzoate 1stBncy5Pycy3
Sample type RNA
 
Channel 1
Source name experiment
Organism Rhodococcus jostii RHA1
Characteristics experiment
Extracted molecule total RNA
Label cy5
 
Channel 2
Source name control
Organism Rhodococcus jostii RHA1
Characteristics control
Extracted molecule total RNA
Label cy3
 
 
Description benzoate vs. pyruvate
Data processing Normalized log ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)
 
Submission date Jul 09, 2006
Last update date Nov 01, 2006
Contact name Michael McLeod
Fax 604-822-6041
Organization name University of British Columbia
Department Microbiology & Immunology
Lab Mohn
Street address 4506 - 2350 Health Sciences Mall
City Vancouver
State/province British Columbia
ZIP/Postal code V6T 1Z3
Country Canada
 
Platform ID GPL3918
Series (2)
GSE5270 Effects of benzoate on Rhodococcus sp. RHA1
GSE5280 Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1

Data table header descriptions
ID_REF
VALUE log2 ratio of means defined as CH1 divided by CH2 log(CH1/CH2)
Experiment Signal Mean
Experiment Background
Control Signal Mean
Control Background Mean
RATIO Normalized ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)

Data table
ID_REF VALUE Experiment Signal Mean Experiment Background Control Signal Mean Control Background Mean RATIO
1 -1.29964214327668769 62.52777777777778 41.0 229.35087719298247 102.76237623762377 0.17006108465862573
2 -0.496860918638383571 99.8157894736842 40.641447368421055 164.05263157894737 99.25657894736842 0.913239922834805328
3 -0.541059531073920581 97.61224489795919 39.91238670694864 167.68085106382978 100.10510510510511 0.853854550510676987
4 -0.892628815239906071 43.03125 39.92903225806452 105.0625 95.1258064516129 0.312198190155418898
5 -0.953759484216731263 42.12903225806452 40.5014409221902 109.34375 95.88150289017341 0.120900420457018735
6 -0.957365013676759275 43.12 41.34384858044164 112.32 99.29968454258675 0.136413854592677322
7 -0.937583232525606948 43.5625 41.64367816091954 111.25 99.47701149425288 0.16298511105687099
8 -0.938754151493912395 41.86666666666667 41.774410774410775 107.04444444444445 98.4074074074074 0.0106814283486670722
9 -0.966594137189854241 45.28 41.83277591973244 119.04 103.78929765886288 0.226037070500618578
10 -0.917299304829039794 43.08695652173913 41.89411764705882 107.82608695652173 105.04313725490196 0.42862394314422492
11 -0.904695865616077013 43.72 42.113432835820895 108.04 97.65970149253731 0.15477080577442917
12 -0.859233732769854451 43.5 41.4025974025974 102.71875 94.64285714285714 0.259711543293633075
13 -1.12237747351694299 48.88 44.551839464882946 150.16666666666666 103.67307692307692 0.093091554319352058
14 -0.87295152272792489 45.08 44.43689320388349 107.92 107.5583596214511 1.77830473106185763
15 -0.792066115502413413 48.28 45.18296529968454 106.6 99.04416403785488 0.409886439545758005
16 -0.928914885102551516 44.08 44.738170347003155 111.6 95.13564668769716 -0.0399754751686082395
17 -0.772480370997924379 47.72 44.55205047318612 103.32 97.76656151419559 0.570448297016655562
18 -0.817583843278585448 48.6 44.64638783269962 110.08 92.92395437262357 0.230450084662369945
19 -0.78815900875468777 48.76 45.22082018927445 107.24 92.66876971608833 0.242888194185855083
20 -1.18674941158322485 72.375 44.80792682926829 237.1304347826087 96.30573248407643 0.195754528294990934

Total number of rows: 22080

Table truncated, full table size 2474 Kbytes.




Supplementary data files not provided

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