GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM119461
Query DataSets for GSM119461
Status
Public on Nov 01, 2006
Title
Benzoate 1stBncy5Pycy3
Sample type
RNA
Channel 1
Source name
experiment
Organism
Rhodococcus jostii RHA1
Characteristics
experiment
Extracted molecule
total RNA
Label
cy5
Channel 2
Source name
control
Organism
Rhodococcus jostii RHA1
Characteristics
control
Extracted molecule
total RNA
Label
cy3
Description
benzoate vs. pyruvate
Data processing
Normalized log ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)
Submission date
Jul 09, 2006
Last update date
Nov 01, 2006
Contact name
Michael McLeod
Fax
604-822-6041
Organization name
University of British Columbia
Department
Microbiology & Immunology
Lab
Mohn
Street address
4506 - 2350 Health Sciences Mall
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V6T 1Z3
Country
Canada
Platform ID
GPL3918
Series (2)
GSE5270
Effects of benzoate on Rhodococcus sp. RHA1
GSE5280
Effect of biphenyl, ethylbenzene, and benzoate on Rhodococcus sp. RHA1
Data table header descriptions
ID_REF
VALUE
log2 ratio of means defined as CH1 divided by CH2 log(CH1/CH2)
Experiment Signal Mean
Experiment Background
Control Signal Mean
Control Background Mean
RATIO
Normalized ratio of means after background subtraction (CH1-BG1)/(CH2-BG2)
Data table
ID_REF
VALUE
Experiment Signal Mean
Experiment Background
Control Signal Mean
Control Background Mean
RATIO
1
-1.29964214327668769
62.52777777777778
41.0
229.35087719298247
102.76237623762377
0.17006108465862573
2
-0.496860918638383571
99.8157894736842
40.641447368421055
164.05263157894737
99.25657894736842
0.913239922834805328
3
-0.541059531073920581
97.61224489795919
39.91238670694864
167.68085106382978
100.10510510510511
0.853854550510676987
4
-0.892628815239906071
43.03125
39.92903225806452
105.0625
95.1258064516129
0.312198190155418898
5
-0.953759484216731263
42.12903225806452
40.5014409221902
109.34375
95.88150289017341
0.120900420457018735
6
-0.957365013676759275
43.12
41.34384858044164
112.32
99.29968454258675
0.136413854592677322
7
-0.937583232525606948
43.5625
41.64367816091954
111.25
99.47701149425288
0.16298511105687099
8
-0.938754151493912395
41.86666666666667
41.774410774410775
107.04444444444445
98.4074074074074
0.0106814283486670722
9
-0.966594137189854241
45.28
41.83277591973244
119.04
103.78929765886288
0.226037070500618578
10
-0.917299304829039794
43.08695652173913
41.89411764705882
107.82608695652173
105.04313725490196
0.42862394314422492
11
-0.904695865616077013
43.72
42.113432835820895
108.04
97.65970149253731
0.15477080577442917
12
-0.859233732769854451
43.5
41.4025974025974
102.71875
94.64285714285714
0.259711543293633075
13
-1.12237747351694299
48.88
44.551839464882946
150.16666666666666
103.67307692307692
0.093091554319352058
14
-0.87295152272792489
45.08
44.43689320388349
107.92
107.5583596214511
1.77830473106185763
15
-0.792066115502413413
48.28
45.18296529968454
106.6
99.04416403785488
0.409886439545758005
16
-0.928914885102551516
44.08
44.738170347003155
111.6
95.13564668769716
-0.0399754751686082395
17
-0.772480370997924379
47.72
44.55205047318612
103.32
97.76656151419559
0.570448297016655562
18
-0.817583843278585448
48.6
44.64638783269962
110.08
92.92395437262357
0.230450084662369945
19
-0.78815900875468777
48.76
45.22082018927445
107.24
92.66876971608833
0.242888194185855083
20
-1.18674941158322485
72.375
44.80792682926829
237.1304347826087
96.30573248407643
0.195754528294990934
Total number of rows:
22080
Table truncated, full table size
2474 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
External link. Please review our
privacy policy
.