NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1194899 Query DataSets for GSM1194899
Status Public on Jul 24, 2013
Title MPP [miRNA]
Sample type RNA
 
Source name MPP
Organism Mus musculus
Characteristics tissue: Bone marrow
cell type: MPP
gender: female
Extracted molecule total RNA
Extraction protocol RNA was isolated from Trizol using a miRNeasy Micro kit according to manufacturer’s instructions (Qiagen)
Label Cy3
Label protocol Standard Aglient protocol by Cogenics – Beckman Coulter Genomics
 
Hybridization protocol Standard Aglient protocol by Cogenics – Beckman Coulter Genomics
Scan protocol Standard Aglient protocol by Cogenics – Beckman Coulter Genomics
Description miR expression in MPPs
Sample name: 251911910564_1_2
Data processing normalization was performed via the quantile method in the limma bioconductor package in R
 
Submission date Jul 24, 2013
Last update date Jul 24, 2013
Contact name Curt I Civin
E-mail(s) ccivin@som.umaryland.edu
Phone 410-706-1198
Organization name University of Maryland School of Medicine
Department Center for Stem Cell Biology & Regenerative Medicine
Street address BRB 14-021, 655 W Baltimore St
City Baltimore
State/province Maryland
ZIP/Postal code 21201
Country USA
 
Platform ID GPL7732
Series (2)
GSE49167 miR expression profiling of mouse hematopoietic stem and progenitor populations [miRNA]
GSE49170 miR expression profiling of mouse hematopoietic stem and progenitor populations

Data table header descriptions
ID_REF
VALUE Quantile normalized intensity

Data table
ID_REF VALUE
1 9.365168082
2 5.41080465
3 5.456240318
4 5.47438196
5 5.294620749
6 5.157627643
7 5.431845787
8 5.343309112
9 6.006871477
10 5.203483959
11 5.203483959
12 10.21962232
13 9.097520087
14 5.294620749
15 7.521382329
16 7.619404859
17 5.388495712
18 5.252665432
19 5.581200582
20 5.662173845

Total number of rows: 12493

Table truncated, full table size 207 Kbytes.




Supplementary file Size Download File type/resource
GSM1194899_US83000163_251911910564_S01_miRNA-v1_10_Apr08_1_2.txt.gz 1.6 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap