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Status
Public on Aug 04, 2006
Title
HeLa, mock, 24 hr vs. HeLa, SOD1 SNP at position 1
Sample type
RNA
Channel 1 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells transfected with siRNA to SOD1, SNP at position 1
Extracted molecule
total RNA
Label
Cy3/Cy5 (fluor-reversed pair)
Channel 2 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells mock-transfected
Extracted molecule
total RNA
Label
Cy5/Cy3 (fluor-reversed pair)
Description
For details please see: Dianne S. Schwarz, Hongliu Ding, Lori Kennington,
Data processing
custom
Submission date
Jul 10, 2006
Last update date
Aug 03, 2006
Contact name
Julja Burchard
Organization name
Merck & Co., Inc.
Department
Computational & Systems Biology
Street address
33 Avenue Louis Pasteur
City
Boston
State/province
MA
ZIP/Postal code
02176
Country
USA
Platform ID
GPL3992 Series (1)
GSE5291 Designing siRNA that distinguish between genes that differ by a single nucleotide
Data table header descriptions ID_REF VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2), error weighted]
LOGINTENSITY Average log intensity of channels
PVALUE Significance of MLRATIO (VALUE)
MLRATIOERROR Error estimate for MLRATIO (VALUE)
Data table ID_REF VALUE LOGINTENSITY PVALUE MLRATIOERROR 10023804644
0.14993
-2.01191
6.856304e-001
3.703914e-001
10023804645
-0.07726
0.11281
1.346911e-001
5.164647e-002
10023804646
0.16268
-0.45682
5.369869e-003
5.843410e-002
10023804647
0.03939
-1.48439
7.520448e-001
1.246893e-001
10023804648
0.11294
-0.76504
3.782116e-002
5.438394e-002
10023804649
-0.02283
-1.59183
9.400969e-001
3.038000e-001
10023804650
-0.04214
-1.58713
8.886232e-001
3.009000e-001
10023804651
-0.10301
-0.33403
5.730735e-002
5.418666e-002
10023804652
0.21694
-0.99673
4.180166e-003
7.574231e-002
10023804653
-0.10480
-1.88688
8.454963e-001
5.378000e-001
10023804654
-0.28263
-2.37726
6.800858e-001
6.854146e-001
10023804655
0.04194
-0.23617
3.777500e-001
4.754555e-002
10023804656
-0.10253
0.53645
4.385462e-002
5.087107e-002
10023804657
0.01296
-0.35013
8.181977e-001
5.639655e-002
10023804658
-0.16380
-2.39967
9.199547e-001
1.630000e+000
10023804659
0.03311
0.43964
5.737861e-001
5.885686e-002
10023804660
-0.00106
-1.39672
9.928968e-001
1.188613e-001
10023804661
0.04293
-0.91945
4.521409e-001
5.709577e-002
10023804662
-0.03513
0.97790
6.095994e-001
6.879930e-002
10023804663
0.02127
-1.23809
8.368597e-001
1.033002e-001
23497 1316 Kbytes .Supplementary file Size Download File type/resource GSM119707.251145449940.txt.gz
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GSM119707.251145449941.txt.gz
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