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Status
Public on Aug 04, 2006
Title
HeLa, mock, 24 hr vs. HeLa, SOD1 SNP at position 10
Sample type
RNA
Channel 1 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells transfected with siRNA to SOD1, SNP at position 10
Extracted molecule
total RNA
Label
Cy3/Cy5 (fluor-reversed pair)
Channel 2 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells mock-transfected
Extracted molecule
total RNA
Label
Cy5/Cy3 (fluor-reversed pair)
Description
For details please see: Dianne S. Schwarz, Hongliu Ding, Lori Kennington,
Data processing
custom
Submission date
Jul 11, 2006
Last update date
Aug 03, 2006
Contact name
Julja Burchard
Organization name
Merck & Co., Inc.
Department
Computational & Systems Biology
Street address
33 Avenue Louis Pasteur
City
Boston
State/province
MA
ZIP/Postal code
02176
Country
USA
Platform ID
GPL3992 Series (1)
GSE5291 Designing siRNA that distinguish between genes that differ by a single nucleotide
Data table header descriptions ID_REF VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2), error weighted]
LOGINTENSITY Average log intensity of channels
PVALUE Significance of MLRATIO (VALUE)
MLRATIOERROR Error estimate for MLRATIO (VALUE)
Data table ID_REF VALUE LOGINTENSITY PVALUE MLRATIOERROR 10023804644
0.26361
-2.20134
6.504925e-001
5.818230e-001
10023804645
-0.01443
0.08776
8.030423e-001
5.785020e-002
10023804646
0.06584
-0.50553
2.558651e-001
5.794239e-002
10023804647
0.09974
-2.12731
6.887599e-001
2.490161e-001
10023804648
0.07964
-0.68955
2.069533e-001
6.310923e-002
10023804649
0.03457
-1.61112
8.241391e-001
1.555783e-001
10023804650
0.02279
-1.72417
8.645406e-001
1.336035e-001
10023804651
-0.02409
-0.11707
6.718996e-001
5.688003e-002
10023804652
-0.22566
-1.10480
2.502099e-004
6.162127e-002
10023804653
0.08782
-1.50232
4.559944e-001
1.178069e-001
10023804654
0.07723
-1.93930
6.338063e-001
1.621157e-001
10023804655
0.03708
-0.09721
4.844512e-001
5.304101e-002
10023804656
-0.08258
0.58051
6.614742e-002
4.494508e-002
10023804657
0.00232
-0.18605
9.602349e-001
4.648132e-002
10023804658
0.00342
-1.85438
9.782524e-001
1.255174e-001
10023804659
-0.00877
0.46267
8.683061e-001
5.289171e-002
10023804660
0.00130
-1.12772
9.826803e-001
5.987797e-002
10023804661
0.04142
-0.83329
4.443415e-001
5.414812e-002
10023804662
-0.08827
0.97443
5.509794e-002
4.601843e-002
10023804663
0.00860
-1.07168
8.932758e-001
6.412978e-002
23369 1307 Kbytes .Supplementary file Size Download File type/resource GSM119746.251145449481.txt.gz
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GSM119746.251145449482.txt.gz
613.3 Kb
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