NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM120575 Query DataSets for GSM120575
Status Public on Sep 22, 2006
Title Brain_Wild-type_MiceNoB4394
Sample type RNA
 
Source name whole brain, nicotinic acetylcholine receptor subunit mutant mice and littermate controls
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: male
Age: 8 weeks
Tissue: whole brain
Treatment protocol untreated wild-type mice
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from whole brains using TRI REAGENT (Sigma-Aldrich, St. Louis, MO) according to the manufacturer?s instructions, and further purified on a Qiagen RNeasy mini kit (Qiagen Sciences, Germantown, MD)
Label biotin-labeled nucleotides
Label protocol Enzo BioArray High Yield Transcript labeling kit
 
Hybridization protocol According to Affymetrix GeneChip expression analysis technical manual
Scan protocol scanned with an Affymetrix Gene-Array Scanner according to Affymetrix GeneChip expression analysis technical manual
Description whole brain from wild-type littermate of nicotinic acetylcholine receptor subunit mutant mice
Data processing MAS5.0, scaled to 150
 
Submission date Jul 16, 2006
Last update date Sep 22, 2006
Contact name Avi Orr-Urtreger
E-mail(s) aviorr@tasmc.health.gov.il
Phone 972-3-697-4704
Fax 972-3-697-4555
Organization name Tel Aviv Sourasky Medical Center
Department Genetic Institute
Lab Research and Development Laboratory
Street address 6 Weizmann St
City Tel Aviv
ZIP/Postal code 64239
Country Israel
 
Platform ID GPL81
Series (1)
GSE5320 whole brains from nicotinic acetylcholine receptor subunit mutant mice and littermate controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated raw signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
100001_at 8.8 A
100002_at 162.3 P
100003_at 22.3 A
100004_at 35.7 A
100005_at 53.7 M
100006_at 54.1 P
100007_at 199.0 P
100009_r_at 628.1 P
100010_at 4.4 A
100011_at 37.7 P
100012_at 144.3 P
100013_at 5.4 A
100014_at 85.8 P
100015_at 47.4 P
100016_at 12.0 A
100017_at 19.3 A
100018_at 109.2 A
100019_at 71.4 P
100020_at 138.8 P
100021_at 2.3 A

Total number of rows: 12488

Table truncated, full table size 209 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap