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Sample GSM120576 Query DataSets for GSM120576
Status Public on Sep 22, 2006
Title Brain_Wild-type_MiceNoB4395
Sample type RNA
 
Source name whole brain, nicotinic acetylcholine receptor subunit mutant mice and littermate controls
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 7 weeks
Tissue: whole brain
Treatment protocol untreated wild-type mice
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from whole brains using TRI REAGENT (Sigma-Aldrich, St. Louis, MO) according to the manufacturer?s instructions, and further purified on a Qiagen RNeasy mini kit (Qiagen Sciences, Germantown, MD)
Label biotin-labeled nucleotides
Label protocol Enzo BioArray High Yield Transcript labeling kit
 
Hybridization protocol According to Affymetrix GeneChip expression analysis technical manual
Scan protocol scanned with an Affymetrix Gene-Array Scanner according to Affymetrix GeneChip expression analysis technical manual
Description whole brain from wild-type littermate of nicotinic acetylcholine receptor subunit mutant mice
Data processing MAS5.0, scaled to 150
 
Submission date Jul 16, 2006
Last update date Sep 22, 2006
Contact name Avi Orr-Urtreger
E-mail(s) aviorr@tasmc.health.gov.il
Phone 972-3-697-4704
Fax 972-3-697-4555
Organization name Tel Aviv Sourasky Medical Center
Department Genetic Institute
Lab Research and Development Laboratory
Street address 6 Weizmann St
City Tel Aviv
ZIP/Postal code 64239
Country Israel
 
Platform ID GPL81
Series (1)
GSE5320 whole brains from nicotinic acetylcholine receptor subunit mutant mice and littermate controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated raw signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
100001_at 5.2 A
100002_at 273.9 P
100003_at 37.8 P
100004_at 63.5 P
100005_at 57.5 M
100006_at 39.3 P
100007_at 224.1 P
100009_r_at 692.4 P
100010_at 4.6 A
100011_at 50.4 P
100012_at 166.4 P
100013_at 8.7 A
100014_at 94.1 P
100015_at 44.0 A
100016_at 11.6 A
100017_at 39.1 M
100018_at 131.5 P
100019_at 75.0 P
100020_at 169.1 P
100021_at 6.3 A

Total number of rows: 12488

Table truncated, full table size 208 Kbytes.




Supplementary data files not provided

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