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Sample GSM120577 Query DataSets for GSM120577
Status Public on Sep 22, 2006
Title Brain_Wild-type_MiceNoLT340
Sample type RNA
 
Source name whole brain, nicotinic acetylcholine receptor subunit mutant mice and littermate controls
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: male
Age: 6 weeks
Tissue: whole brain
Treatment protocol untreated wild-type mice
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from whole brains using TRI REAGENT (Sigma-Aldrich, St. Louis, MO) according to the manufacturer?s instructions, and further purified on a Qiagen RNeasy mini kit (Qiagen Sciences, Germantown, MD)
Label biotin-labeled nucleotides
Label protocol Enzo BioArray High Yield Transcript labeling kit
 
Hybridization protocol According to Affymetrix GeneChip expression analysis technical manual
Scan protocol scanned with an Affymetrix Gene-Array Scanner according to Affymetrix GeneChip expression analysis technical manual
Description whole brain from wild-type littermate of nicotinic acetylcholine receptor subunit mutant mice
Data processing MAS5.0, scaled to 150
 
Submission date Jul 16, 2006
Last update date Sep 22, 2006
Contact name Avi Orr-Urtreger
E-mail(s) aviorr@tasmc.health.gov.il
Phone 972-3-697-4704
Fax 972-3-697-4555
Organization name Tel Aviv Sourasky Medical Center
Department Genetic Institute
Lab Research and Development Laboratory
Street address 6 Weizmann St
City Tel Aviv
ZIP/Postal code 64239
Country Israel
 
Platform ID GPL81
Series (1)
GSE5320 whole brains from nicotinic acetylcholine receptor subunit mutant mice and littermate controls

Data table header descriptions
ID_REF
VALUE MAS5-calculated raw signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
100001_at 3.0 A
100002_at 149.7 P
100003_at 62.9 P
100004_at 57.3 P
100005_at 101.7 P
100006_at 50.4 P
100007_at 259.5 P
100009_r_at 1119.0 P
100010_at 11.1 A
100011_at 58.0 P
100012_at 208.8 M
100013_at 26.0 A
100014_at 102.4 P
100015_at 65.9 A
100016_at 24.7 A
100017_at 56.0 P
100018_at 39.4 A
100019_at 102.2 P
100020_at 116.7 P
100021_at 2.0 A

Total number of rows: 12488

Table truncated, full table size 209 Kbytes.




Supplementary data files not provided

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