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Sample GSM121453 Query DataSets for GSM121453
Status Public on Sep 08, 2006
Title rdr2, mixed stage inflorescence small RNA 454 set
Sample type other
 
Source name Inflorescence tissue
Organism Arabidopsis thaliana
Characteristics rdr2 454 data
Extracted molecule total RNA
 
Description Plants were grown in soil in growth chamber with 16
hours of light for 5 weeks. Immature inflorescence was harvested ~2 hours
after dark. Tissue included inflorescence meristem and early stage floral
buds (up to Stage 11/12). Total RNA was isolated using TRIzol reagent.
Data processing To determine the abundance value for each signature in the library, we counded the number of occurence of each signature in the specific library to give us the Raw or the abundance value.
 
Submission date Jul 18, 2006
Last update date Sep 08, 2006
Contact name Blake C. Meyers
E-mail(s) bmeyers@danforthcenter.org
Phone 314-587-1422
Organization name Donald Danforth Plant Science Center
Lab Meyers lab
Street address 975 N Warson Road
City St. Louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platform ID GPL4011
Series (1)
GSE5343 Small RNA identification in Arabidopsis thaliana using 454 data

Data table header descriptions
ID_REF
VALUE Raw Value of the signature in Library

Data table
ID_REF VALUE
AAGCTCAGGAGGGATAGCGCC 127
AGAAATCTTGATGATGCTGCAT 17
AGAAGCTGCCAGCATGATCTA 1
AGAATCTGATGATGCTGCAT 5
AGAATCTTGACTGATGCTGCAT 1
AGAATCTTGATGACTGCTGCAT 2
AGAATCTTGATGATGACTGCAT 2
AGAATCTTGATGATGCCGCAT 2
AGAATCTTGATGATGCTGC 212
AGAATCTTGATGATGCTGCA 7
AGAATCTTGATGATGCTGCAC 211
AGAATCTTGATGATGCTGCAT 1491
AGAATCTTGATGATGCTGCATT 125
AGAATCTTGATGATGCTGCATTA 8
AGAATCTTGATGATGCTGCATTT 10
AGAATCTTGATGATGCTGTAT 4
AGAATCTTGATTGATGCTGCAT 3
AGAATCTTTGATGATGCTGCA 2
AGAATCTTTGATGATGCTGCAT 65
AGAATCTTTGATGATGCTGCATT 5

Total number of rows: 1984

Table truncated, full table size 48 Kbytes.




Supplementary data files not provided

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