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GEO accession:
Sample GSM1226583
Query DataSets for GSM1226583
Status
Public on Sep 23, 2013
Title
SUM159 Control rep3
Sample type
RNA
Source name
SUM159
Organism
Homo sapiens
Characteristics
cell line: SUM159
treatment: control
tissue: Claudin-low breast cancer
Extracted molecule
total RNA
Extraction protocol
standard Affymetrix protocol
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Data processing
MAS 5.0
Submission date
Sep 09, 2013
Last update date
Sep 23, 2013
Contact name
Joe Taube
E-mail(s)
jhtaube@mdanderson.org
Phone
7135637092
Organization name
MD Anderson Cancer Center
Department
Translational Molecular Pathology
Lab
Mani Lab
Street address
7435 Fannin St
City
Houston
State/province
Texas
ZIP/Postal code
77054
Country
USA
Platform ID
GPL570
Series (1)
GSE50697
Gene expression of SUM159 breast cancer cell line expressing microRNA--203
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1010.58
P
0.000126798
AFFX-BioB-M_at
1103.25
P
4.42873e-05
AFFX-BioB-3_at
808.651
P
0.000126798
AFFX-BioC-5_at
2363.51
P
5.16732e-05
AFFX-BioC-3_at
3053.18
P
0.000126798
AFFX-BioDn-5_at
5941.62
P
4.42873e-05
AFFX-BioDn-3_at
11099.8
P
9.4506e-05
AFFX-CreX-5_at
31998.7
P
5.16732e-05
AFFX-CreX-3_at
35153.4
P
4.42873e-05
AFFX-DapX-5_at
599.807
P
6.02111e-05
AFFX-DapX-M_at
2098.21
P
0.000581214
AFFX-DapX-3_at
1705.49
P
5.16732e-05
AFFX-LysX-5_at
124.303
P
0.00179591
AFFX-LysX-M_at
188.76
M
0.050229
AFFX-LysX-3_at
251.688
P
4.42873e-05
AFFX-PheX-5_at
140.857
P
8.14279e-05
AFFX-PheX-M_at
324.232
P
0.0032123
AFFX-PheX-3_at
233.8
P
0.000146581
AFFX-ThrX-5_at
72.3712
A
0.102126
AFFX-ThrX-M_at
221.153
P
0.00618711
Total number of rows:
54675
Table truncated, full table size
1628 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1226583_S1100958.MDA.03_HG-U133_Plus_2_.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
GSM1226583_S1100958.MDA.03_HG-U133_Plus_2_.mas5.CHP.gz
489.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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