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GEO accession:
Sample GSM1226586
Query DataSets for GSM1226586
Status
Public on Sep 23, 2013
Title
SUM159 miR-203 rep3
Sample type
RNA
Source name
SUM159
Organism
Homo sapiens
Characteristics
cell line: SUM159
treatment: pBabe puro miR-203
tissue: Claudin-low breast cancer
Extracted molecule
total RNA
Extraction protocol
standard Affymetrix protocol
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Data processing
MAS 5.0
Submission date
Sep 09, 2013
Last update date
Sep 23, 2013
Contact name
Joe Taube
E-mail(s)
jhtaube@mdanderson.org
Phone
7135637092
Organization name
MD Anderson Cancer Center
Department
Translational Molecular Pathology
Lab
Mani Lab
Street address
7435 Fannin St
City
Houston
State/province
Texas
ZIP/Postal code
77054
Country
USA
Platform ID
GPL570
Series (1)
GSE50697
Gene expression of SUM159 breast cancer cell line expressing microRNA--203
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
844.28
P
0.000195116
AFFX-BioB-M_at
1016.84
P
4.42873e-05
AFFX-BioB-3_at
835.886
P
0.00010954
AFFX-BioC-5_at
2350.86
P
5.16732e-05
AFFX-BioC-3_at
2848.83
P
4.42873e-05
AFFX-BioDn-5_at
6163.38
P
4.42873e-05
AFFX-BioDn-3_at
10107.3
P
9.4506e-05
AFFX-CreX-5_at
29276.8
P
5.16732e-05
AFFX-CreX-3_at
31112.8
P
4.42873e-05
AFFX-DapX-5_at
428.504
P
7.00668e-05
AFFX-DapX-M_at
1722.45
P
0.000581214
AFFX-DapX-3_at
1381.3
P
6.02111e-05
AFFX-LysX-5_at
126.407
P
0.000389797
AFFX-LysX-M_at
129.432
P
0.0429619
AFFX-LysX-3_at
167.781
P
4.42873e-05
AFFX-PheX-5_at
165.72
P
0.000146581
AFFX-PheX-M_at
214.18
P
0.0032123
AFFX-PheX-3_at
200.982
P
8.14279e-05
AFFX-ThrX-5_at
68.4515
A
0.0894781
AFFX-ThrX-M_at
145.069
P
0.002867
Total number of rows:
54675
Table truncated, full table size
1630 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1226586_S1100958.MDA.06_HG-U133_Plus_2_.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
GSM1226586_S1100958.MDA.06_HG-U133_Plus_2_.mas5.CHP.gz
489.3 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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