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GEO accession:
Sample GSM12298
Query DataSets for GSM12298
Status
Public on Nov 25, 2003
Title
C3 Renal Clear Cell Carcinoma U133A
Sample type
RNA
Source name
Trizol isolation of total RNA from Renal Clear Cell Carcinoma tissue
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Age = 50; Gender = Male; Left Kidney; Tumor Type = clear cell; Tumor Fuhrman Grade = 2; Tumor Capsule Penetration = false; Tumor Perinephric Fat Invasion = false; Tumor Renal Sinus Invasion = true; Tumor Renal Vein Invasion = false; Tumor Location: mid; Scaling Target = 500; Scaling Factor = 4.77; Raw Q = 2.87; Noise = 3.57; Background = 70.69.
Keywords = kidney
Keywords = renal
Keywords = RCC
Keywords = carcinoma
Keywords = cancer
Lot batch = 2004638
Submission date
Oct 23, 2003
Last update date
May 28, 2005
Contact name
Marc E. Lenburg
E-mail(s)
mlenburg@bu.edu
Phone
617-414-1375
Fax
617-414-1646
URL
http://gg.bu.edu
Organization name
Boston University School of Medicine
Department
Genetics and Genomics
Street address
715 Albany Street, E613B
City
Boston
State/province
MA
ZIP/Postal code
02130
Country
USA
Platform ID
GPL96
Series (1)
GSE781
Normal and Renal Cell Carcinoma Kidney Tissue, Human
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Statistical Algorithm (mean scaled to 500)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call with Alpha1 = 0.05, Alpha2 = 0.065
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
542.8
P
AFFX-BioB-M_at
805.1
P
AFFX-BioB-3_at
388.7
P
AFFX-BioC-5_at
1186.3
P
AFFX-BioC-3_at
807.9
P
AFFX-BioDn-5_at
1125.8
P
AFFX-BioDn-3_at
7451.2
P
AFFX-CreX-5_at
12120.4
P
AFFX-CreX-3_at
17392.4
P
AFFX-DapX-5_at
31.7
A
AFFX-DapX-M_at
58.5
A
AFFX-DapX-3_at
8.3
A
AFFX-LysX-5_at
4.3
A
AFFX-LysX-M_at
30.4
A
AFFX-LysX-3_at
10.2
A
AFFX-PheX-5_at
9
A
AFFX-PheX-M_at
5.5
A
AFFX-PheX-3_at
44.9
A
AFFX-ThrX-5_at
14.5
A
AFFX-ThrX-M_at
18.5
A
Total number of rows:
22283
Table truncated, full table size
402 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM12298.CEL.gz
3.3 Mb
(ftp)
(http)
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