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Sample GSM12383 Query DataSets for GSM12383
Status Public on May 10, 2004
Title RE3_IB314-RpoH:PCN_HS_37C_60 min_4d196_3
Sample type RNA
 
Channel 1
Source name IB314 60 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name IB314 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium IB314-RpoH:PCN Expression after heatshock with 37C compared to 30C RNA and 30C DNA.
User - PCheng
Date_of_Scan = Tue Oct 14 11:23:59 2003
Sample_target_source3: IB314 genomic DNA
 
Submission date Oct 23, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE809 14028s:rpoH_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2240 41320 11000.32129 165.148941 18516.70703 254.074081 132.55455 14300 40.054203 0.97062 0.500473 0.993217 43.295724 0.444865 1708.892822 572.803162 501.275513 361.529724 107.047455 2800 40.054203 0.92907 0.982849 0.988708 4.726839 0.851342 1166.4375 57.324467 1285.170166 127.344307 123.349976 9600 40.054203 0.950681 0.959419 0.996284 9.159715 0.901361 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 10835.17235 1136.08966 1109.113033 0.542294341 0.022171142 0.019445739 24.45946812 27.88756698 1.140154269 1.388447009 1.445410626 0.056963618
2 2470 41320 420.227264 146.468079 308.999817 240.581375 127.411957 11000 35.760105 0.961907 0.990532 0.992416 1.746716 0.465791 1605.5625 606.99469 324.512543 367.301636 101.554138 1600 35.760105 0.82363 0.992249 0.989777 4.371237 0.732116 2919.022461 69.531914 2573.647705 151.957336 129.640915 13400 35.760105 0.957605 0.910545 0.995552 19.209487 0.821091 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 273.759185 998.56781 2849.490547 0.013701495 0.01948736 0.049959244 0.70309649 0.274253444 0.390065159 -0.15298507 -0.56184791 -0.40886284
3 2710 41330 370.229736 181.930847 268.759216 295.791565 122.052879 7400 36.287811 0.940405 0.99205 0.991203 1.251658 0.333775 1820.857178 668.537231 362.259308 405.070404 68.171295 700 36.287811 0.630381 0.992455 0.985687 4.495162 0.560338 2049.73584 78.787231 2510.747803 169.878143 122.832779 10600 36.287811 0.939552 0.93161 0.995506 12.065919 0.86322 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 188.298889 1152.319947 1970.948609 0.009424255 0.022487881 0.034556038 0.419081481 0.272723818 0.650765616 -0.37770153 -0.564276932 -0.186575402
4 2940 41320 550.878784 222.404251 266.064697 281.840088 124.633568 6600 35.760105 0.939103 0.993416 0.991608 1.954579 0.521221 1720.428589 734.313843 336.077301 431.655762 80.976448 1400 35.760105 0.707078 0.990082 0.98674 3.98565 0.628513 2512.740723 121.303192 2111.332275 214.476196 127.161888 13500 35.760105 0.961632 0.919319 0.993866 11.715709 0.838638 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 328.474533 986.114746 2391.437531 0.016439967 0.019244335 0.041928341 0.85427568 0.392096779 0.458981553 -0.068401957 -0.406606726 -0.338204769
5 3180 41320 744.173889 324.074463 263.568817 367.262604 89.91703 2300 40.054203 0.777768 0.993446 0.988869 2.026272 0.540339 1678.625 702.021301 464.728729 401.006866 116.447433 1600 40.054203 0.908631 0.986046 0.987892 4.186026 0.817262 1835.771484 176.739365 2061.659668 275.420441 112.837929 7000 40.054203 0.922554 0.947105 0.993088 6.665342 0.845107 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 420.099426 976.603699 1659.032119 0.021025742 0.019058724 0.029087301 1.103208287 0.722849534 0.655224895 0.042657516 -0.140952095 -0.18360961
6 3410 41330 449.317474 245.914886 210.677841 364.976074 122.573364 6300 31.484138 0.930116 0.993896 0.989059 1.231087 0.32829 1513.125 646.547852 178.750427 450.222809 99.974663 1600 31.484138 0.825818 0.994606 0.986618 3.360836 0.734061 3965.274658 149.420212 2737.064209 245.260269 128.655029 14200 31.484138 0.964324 0.919312 0.993996 16.167619 0.838623 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 203.402588 866.577148 3815.854446 0.010180186 0.016911522 0.066902206 0.601967486 0.15216518 0.252779733 -0.220426966 -0.817684715 -0.597257749
7 3650 41330 577.90741 251.718079 294.833069 318.605377 123.865005 5400 36.287811 0.92306 0.99176 0.99144 1.813866 0.483698 1582.428589 653.893616 170.793488 421.48996 96.078033 1400 36.287811 0.848708 0.995987 0.987877 3.754368 0.754407 723.855652 88.968086 1102.733521 176.415436 126.660263 9700 36.287811 0.937442 0.967377 0.994446 4.103131 0.83615 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 326.189331 928.534973 634.887566 0.016325594 0.018120648 0.011131289 0.900938774 1.466640055 1.627902025 -0.045304722 0.166323542 0.211628263
8 3880 41330 608.876709 231.127655 337.965302 281.687073 120.741859 7300 31.484138 0.941778 0.990379 0.992622 2.161536 0.57641 1787.333374 698.643616 289.196167 395.331482 77.768173 1200 31.484138 0.726373 0.991669 0.987915 4.521101 0.645665 2754.14917 116.94149 3050.120605 212.855728 125.904076 13400 31.484138 0.963992 0.883644 0.993668 12.939042 0.785461 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 377.749054 1088.689758 2637.20768 0.01890613 0.021246118 0.046237354 0.889862777 0.40889299 0.459501173 -0.05067696 -0.388390335 -0.337713376
9 4120 41330 559.75 220.452133 356.661743 306.490082 131.5905 8000 36.287811 0.96607 0.988983 0.992752 1.826323 0.48702 1635.555542 665.909546 130.992477 392.224182 67.230957 900 36.287811 0.594639 0.997253 0.98896 4.169951 0.528568 968.450989 105 1559.231201 208.052521 125.651001 10200 36.287811 0.959105 0.962814 0.993614 4.654839 0.849733 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 339.297867 969.645996 863.450989 0.016981669 0.018922942 0.015138621 0.897411671 1.12174476 1.249977905 -0.047008287 0.04989405 0.096902336
10 4350 41340 310.207794 101.787231 282.260406 199.361328 124.888702 7700 30.061882 0.949877 0.991142 0.994385 1.556008 0.414935 1379.925903 605.867004 214.508362 413.590546 115.072563 2700 30.061882 0.917892 0.993034 0.986336 3.336454 0.81261 1453.071411 69.787231 1501.338745 255.37764 126.156639 12600 30.061882 0.944594 0.9496 0.994736 5.689893 0.869959 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 208.420563 774.058899 1383.28418 0.010431333 0.015105999 0.024252697 0.690542399 0.430110224 0.62285853 -0.160809651 -0.366420234 -0.205610583
11 4590 41340 387.789459 125.94149 351.278412 237.332703 122.3134 9500 35.060959 0.943781 0.98822 0.992867 1.633949 0.43572 1441.5 608.898926 162.900528 388.07251 102.490135 2600 35.060959 0.917437 0.995407 0.988014 3.714512 0.825007 796.15387 44.920212 841.360962 141.840454 127.910637 10400 35.060959 0.956389 0.976067 0.994934 5.613024 0.868646 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 261.847969 832.601074 751.233658 0.013105345 0.016248468 0.013171149 0.806558802 0.995003901 1.233640868 -0.093363965 -0.002175217 0.091188748
12 4820 41340 296.818176 133.994675 211.962982 231.52063 124.377907 7700 30.061882 0.935839 0.993629 0.992897 1.282038 0.341877 1310.285767 625.861694 138.838898 483.520264 58.08688 700 30.061882 0.536996 0.997078 0.988342 2.709888 0.47733 648.84613 54.228722 679.656982 146.05719 124.377907 9100 30.061882 0.947471 0.972404 0.995308 4.442411 0.844779 1 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 1 1 162.823501 684.424073 594.617408 0.008149226 0.013356748 0.010425245 0.610120482 0.781681944 1.281192761 -0.214584395 -0.106969919 0.107614476
13 5050 41350 830.511292 119.888298 628.453796 220.564468 128.407379 13300 27.214489 0.962201 0.983734 0.992409 3.76539 0.826551 1617.149292 577.622314 344.955505 356.419983 113.119675 6700 27.214489 0.933144 0.989243 0.989044 4.537202 0.847029 4235 36.80851 2259.770264 103.239067 128.407379 14000 27.214489 0.954911 0.933456 0.99646 41.021293 0.866913 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 710.622994 1039.526978 4198.19149 0.035566285 0.020286691 0.073605604 1.753183133 0.483200776 0.275613407 0.243827284 -0.315872377 -0.55969966
14 5290 41350 258.048401 128.680847 210.873779 220.4561 125.397415 6200 31.877619 0.9389 0.993889 0.993065 1.170521 0.312139 1482.625 576.882996 362.424744 405.097382 78.986549 800 31.877619 0.772679 0.991638 0.987968 3.659922 0.686826 968.189636 44.920212 1661.888794 119.568474 117.535744 5800 31.877619 0.939926 0.954933 0.996223 8.097366 0.879852 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 129.367554 905.742004 923.269424 0.006474774 0.017675836 0.0161874 0.366306521 0.399988518 1.091950307 -0.43615535 -0.397952475 0.038202875
15 5530 41350 307.605621 120.569145 250.317993 245.058548 126.911324 7100 36.629726 0.951777 0.99231 0.992157 1.255233 0.334729 1469.400024 607.813843 216.113129 380.369324 89.562332 2000 36.629726 0.831692 0.99424 0.987968 3.863088 0.739281 1641.79834 57.537235 2716.722656 142.347412 125.397415 11900 36.629726 0.93579 0.942528 0.996445 11.533742 0.871581 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 187.036476 861.586181 1584.261105 0.009361071 0.016814121 0.027776364 0.556738659 0.337015723 0.605339179 -0.254348621 -0.472349837 -0.218001216
16 5760 41360 364.352936 123.473404 314.540924 215.971512 130.375427 8500 36.45063 0.959844 0.989418 0.993401 1.687042 0.449878 1569.222168 606.5 283.918915 403.728455 91.669968 900 36.45063 0.783727 0.994179 0.989731 3.886826 0.696646 1329.754517 59.723404 1018.328552 132.17804 120.21344 11000 36.45063 0.936779 0.972832 0.99614 10.060329 0.873557 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 240.879532 962.722168 1270.031113 0.012055886 0.018787822 0.022267066 0.641686229 0.541422313 0.84374931 -0.192677281 -0.26646385 -0.073786569
17 6000 41370 338.247437 146.952133 321.953949 267.408813 128.159256 9700 46.547485 0.950609 0.990776 0.991692 1.264908 0.337309 1504.894775 602.414917 264.493622 401.826233 94.069214 1900 46.547485 0.871717 0.993927 0.98819 3.745138 0.77486 1354.573853 50.744682 1622.31189 152.636963 122.832779 11500 46.547485 0.950001 0.951981 0.995941 8.874481 0.900002 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 191.295304 902.479858 1303.829171 0.009574223 0.017612174 0.022859637 0.543613938 0.418826572 0.770448552 -0.264709417 -0.377965773 -0.113256356
18 6220 41360 465.027039 133.553192 641.856934 240.705582 123.091644 7400 28.766994 0.944215 0.987061 0.994057 1.931933 0.515182 1368.642822 552.707458 186.698273 332.049316 62.316784 1400 28.766994 0.800713 0.995667 0.988235 4.121806 0.711745 1000.112915 44.186169 3381.786621 119.969299 113.681061 6200 28.766994 0.889028 0.939835 0.996498 8.336407 0.790247 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 331.473847 815.935364 955.926746 0.016590081 0.015923232 0.016759971 1.041879048 0.989863401 0.950075158 0.017817304 -0.004424733 -0.022242037
19 6460 41360 312.661285 93.803192 250.938492 177.257111 126.156639 6200 32.451412 0.952526 0.993507 0.994698 1.763886 0.47037 1182 543.574463 135.118469 376.887451 93.389999 900 32.451412 0.782125 0.997398 0.988213 3.136215 0.695222 494.609741 50.244682 1466.954468 122.201614 113.681061 4100 32.451412 0.93625 0.927834 0.996445 4.047489 0.834642 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 218.858093 638.425537 444.365059 0.010953726 0.012459072 0.007790916 0.879176665 1.405961148 1.599179327 -0.055923847 0.14797332 0.203897167
20 2240 41540 411.567169 169.989365 297.454407 253.531143 125.397415 6700 49.098274 0.95926 0.990921 0.993217 1.62334 0.432891 1443.285767 574.813843 316.192535 375.177307 105.550217 2100 49.098274 0.839176 0.989693 0.989273 3.846943 0.745934 852.036011 58.893616 714.854736 144.002441 121.005196 11100 49.098274 0.932149 0.979919 0.995621 5.916816 0.864297 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 241.577804 868.471924 793.142395 0.012090835 0.016948499 0.013905922 0.713386749 0.869473752 1.218797172 -0.146674962 -0.060743524 0.085931438

Total number of rows: 5776

Table truncated, full table size 3024 Kbytes.




Supplementary data files not provided

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