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Sample GSM12388 Query DataSets for GSM12388
Status Public on May 10, 2004
Title RE3_IB314-RpoH:PCN_HS_37C_140 min_4d200_2
Sample type RNA
 
Channel 1
Source name IB314 140 min post treatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
Channel 2
Source name IB314 pretreatment
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule total RNA
 
 
Description Salmonella typhimurium IB314-RpoH:PCN Expression after heatshock with 37C compared to 30C RNA and 30C DNA
User - PCheng
Date_of_Scan = Wed Oct 15 10:58:37 2003
Sample_target_source3: IB314 genomic DNA
 
Submission date Oct 23, 2003
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE809 14028s:rpoH_heat_shock_37C_RNA

Data table header descriptions
ID_REF Spot Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH3_MEAN Channel 3 mean
CH3_BKD_MEAN Channel 3 mean background
CH3_SD Channel 3 standard deviation
CH3_BKD_SD Channel 3 background standard deviation
CH3_DIAMETER Channel 3 diameter
CH3_AREA Channel 3 area
CH3_FOOTPRINT Channel 3 footprint
CH3_CIRCULARITY Channel 3 circularity
CH3_SPOT_UNIFORMITY Channel 3 spot uniformity
CH3_BKD_UNIFORMITY Channel 3 background uniformity
CH3_SIGNAL_NOISE_RATIO Channel 3 signal to noise ratio
CH3_CONFIDENCE Channel 3 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
CH3_DIAMETER_FILTER Channel 3 diameter filter
CH3_AREA_FILTER Channel 3 area filter
CH3_CIRCULARITY_FILTER Channel 3 circularity filter
CH3_SPOT_UNIFORMITY_FILTER Channel 3 spot uniformity filter
CH3_BKD_UNIFORMITY_FILTER Channel 3 background uniformity filter
CH3_SIGNAL_NOISE_RATIO_FILTER Channel 3 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH3_BKD_CORR Channel 3 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
CH3%_OF_TOTAL Channel 3 % of total
PRE-VALUE ch1 % of total / ch2 % of total
PRE-VALUE2 ch1 % of total / ch3 % of total
PRE-VALUE3 ch2 % of total / ch3 % of total
VALUE log of ch1 % of total / ch2 % of total
VALUE2 log of ch1 % of total / ch3 % of total
VALUE3 log of ch2 % of total / ch3 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH3_MEAN CH3_BKD_MEAN CH3_SD CH3_BKD_SD CH3_DIAMETER CH3_AREA CH3_FOOTPRINT CH3_CIRCULARITY CH3_SPOT_UNIFORMITY CH3_BKD_UNIFORMITY CH3_SIGNAL_NOISE_RATIO CH3_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER CH3_DIAMETER_FILTER CH3_AREA_FILTER CH3_CIRCULARITY_FILTER CH3_SPOT_UNIFORMITY_FILTER CH3_BKD_UNIFORMITY_FILTER CH3_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH3_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL CH3%_OF_TOTAL PRE-VALUE PRE-VALUE2 PRE-VALUE3 VALUE VALUE2 VALUE3
1 2320 22550 1198.700928 93.914894 2013.510742 186.125916 126.911324 10700 14.718109 0.952778 0.931763 0.994225 6.440269 0.863525 1501.419312 468.452118 864.880493 311.968414 104.031433 3100 14.718109 0.928113 0.963638 0.989975 4.812729 0.853216 227.212128 68.260635 179.542953 161.572693 115.072563 3300 14.718109 0.92764 0.995132 0.994461 1.406253 0.375001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1104.786034 1032.967194 158.951493 0.084502081 0.025836551 0.007203714 3.270640899 11.73034877 3.58655968 0.514632863 1.069310925 0.554678062
2 2550 22550 262.983337 89.436172 223.64389 206.356812 125.143318 6000 14.041449 0.957299 0.993698 0.992851 1.274411 0.339843 1486.875 598.026611 318.869171 446.857178 55.851925 800 14.041449 0.593679 0.992767 0.987053 3.327405 0.527714 471.942871 44.271278 567.54895 111.795059 122.573364 7000 14.041449 0.949804 0.981094 0.996529 4.2215 0.839267 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 1 1 1 173.547165 888.848389 427.671593 0.013274151 0.022231855 0.019382164 0.597077974 0.684864224 1.147026442 -0.223968949 -0.16439552 0.05957343
3 2790 22550 336.378387 105.292557 275.266632 227.876938 122.573364 7400 14.718109 0.9528 0.991928 0.991989 1.476141 0.393637 1363.409058 532.803162 485.921387 461.007843 109.980812 2200 14.718109 0.885861 0.986778 0.984383 2.957453 0.787432 279.822571 59.005318 331.313507 143.968079 115.899437 6200 14.718109 0.921941 0.990501 0.99601 1.943643 0.518305 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 231.08583 830.605896 220.817253 0.017675127 0.020775095 0.010007483 0.850784409 1.766191026 2.075956032 -0.070180477 0.247037674 0.317218151
4 3020 22550 307.730164 69.031914 296.961182 134.162079 126.156639 6300 14.041449 0.945383 0.990738 0.996193 2.293719 0.611659 1115.315796 420.734039 262.217285 326.009827 111.418526 3800 14.041449 0.905073 0.992432 0.989647 3.421111 0.810145 434.939392 48.239361 639.255432 139.343353 116.447433 6600 14.041449 0.917314 0.979721 0.995544 3.12135 0.804739 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 238.69825 694.581757 386.700031 0.01825738 0.017372863 0.017525325 1.050913762 1.041771301 0.991300465 0.021567079 0.017772389 -0.00379469
5 3260 22560 307.383331 77.973404 290.506989 164.862259 127.910637 6000 6.001032 0.952891 0.992859 0.995255 1.864486 0.497196 1346.181763 487.601074 554.903503 309.419891 100.925308 2200 6.001032 0.862382 0.979874 0.990791 4.350663 0.766561 201.085709 48.276596 148.577042 137.580933 115.072563 3500 6.001032 0.86541 0.995918 0.995529 1.461581 0.389755 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 1 229.409927 858.580689 152.809113 0.017546942 0.0214748 0.00692534 0.817094538 2.533729879 3.100901747 -0.087727693 0.403760313 0.491488006
6 3490 22560 363.168823 111.654259 326.971375 221.989288 122.573364 7700 4.068408 0.943759 0.989136 0.992844 1.635975 0.43626 1147.92688 614.558533 233.376236 1740.305664 114.795609 4100 4.068408 0.895719 0.992714 0.987381 0.659612 0.175897 327.776306 44.053192 305.121063 111.586166 123.349976 7600 4.068408 0.958711 0.991501 0.996658 2.937428 0.783314 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 1 251.514564 533.368347 283.723114 0.019237665 0.013340597 0.01285839 1.442039365 1.49611777 1.037501338 0.158977116 0.174965781 0.015988665
7 3730 22560 294.083344 77.196808 282.73407 161.766785 122.832779 4800 6.001032 0.953951 0.99073 0.995041 1.817946 0.484786 1070.722168 479.111694 165.750351 400.569672 113.119675 3600 6.001032 0.902455 0.995186 0.988045 2.672999 0.7128 231.709671 76.223404 226.663803 167.110855 119.682693 3100 6.001032 0.921286 0.993385 0.99485 1.386563 0.36975 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 0 1 216.886536 591.610474 155.486267 0.016589062 0.014797347 0.00704667 1.121083485 2.354170518 2.099906519 0.049637955 0.371837917 0.322199962
8 3960 22560 341.43103 74.19149 322.784424 168.810867 121.791801 5800 4.068408 0.958359 0.992104 0.994339 2.022565 0.539351 1208.45166 493.234039 282.496582 390.00174 101.554138 3100 4.068408 0.866493 0.992676 0.988045 3.09858 0.770216 361.28125 79.276596 299.421387 207.32222 117.535744 6400 4.068408 0.897 0.991371 0.993568 1.742607 0.464695 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 0 1 267.23954 715.217621 282.004654 0.020440426 0.017889006 0.012780509 1.142625012 1.599343689 1.399710029 0.057903726 0.203941801 0.146038074
9 4200 22560 306.915253 86.005318 262.724091 159.367523 122.573364 5900 6.001032 0.926054 0.991791 0.995285 1.925833 0.513555 1085.599976 444.882965 256.41748 341.030243 113.400711 2500 6.001032 0.894121 0.992096 0.990402 3.183295 0.794774 311.66037 50.69149 358.431824 139.236038 111.418526 5300 6.001032 0.900799 0.991982 0.996017 2.23836 0.596896 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 220.909935 640.717011 260.96888 0.0168968 0.016025599 0.011827163 1.054363128 1.428643558 1.354982472 0.02299021 0.154923887 0.131933677
10 4430 22560 244.438599 72.042557 252.409821 149.890762 122.573364 5700 4.068408 0.952514 0.991783 0.996109 1.630778 0.434874 1122.805542 415.765961 244.118683 346.045258 107.640526 3600 4.068408 0.899938 0.99118 0.989212 3.244678 0.799945 537.014465 30.531916 523.379089 106.852509 126.660263 6900 4.068408 0.944734 0.986702 0.996765 5.025754 0.857667 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 172.396042 707.039581 506.482549 0.013186105 0.017684457 0.022953893 0.745632416 0.574460492 0.770433902 -0.127475219 -0.240739834 -0.113264615
11 4670 22570 274.694916 76.936172 217.149185 182.597473 125.651001 5900 7.443254 0.961064 0.993767 0.995277 1.504374 0.401166 1257.594604 436.409576 451.504486 335.411285 110.558136 3700 7.443254 0.915428 0.980217 0.990257 3.749411 0.826069 278.641022 53.973404 236.927094 158.622421 123.607758 3900 7.443254 0.943744 0.99263 0.994904 1.756631 0.468435 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 197.758744 821.185028 224.667618 0.015126029 0.020539461 0.010181983 0.73643749 1.485568135 2.017235889 -0.132864111 0.171892575 0.304756686
12 4900 22570 268.061218 84.88298 279.835022 182.433517 115.899437 4900 5.99513 0.940731 0.991432 0.993591 1.469364 0.39183 1168.046509 431.446808 390.395355 324.960693 115.899437 4300 5.99513 0.924665 0.982048 0.990677 3.594424 0.821251 372.272736 53.723404 394.320587 126.003517 111.70385 4400 5.99513 0.891332 0.987213 0.996544 2.954463 0.787857 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 183.178238 736.599701 318.549332 0.014010806 0.018423814 0.014436721 0.760472573 0.970497765 1.276177208 -0.118916444 -0.01300546 0.105910984
13 5140 22570 369.232544 71.212769 333.134338 165.909317 126.156639 8600 7.443254 0.949383 0.990211 0.99501 2.225508 0.593469 1177.56665 427.851074 420.610443 322.501495 114.239693 3000 7.443254 0.93123 0.984795 0.990868 3.651353 0.823051 417.293488 61.547871 408.975159 150.769012 128.159256 9200 7.443254 0.954102 0.987511 0.995483 2.767767 0.738071 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 298.019775 749.715576 355.745617 0.022794723 0.018751868 0.016122464 1.215597408 1.413848533 1.16308946 0.084789765 0.150402885 0.06561312
14 5370 22570 253.964279 79.718086 234.408035 196.745636 119.416435 5600 5.99513 0.933897 0.992851 0.993652 1.290825 0.34422 992.76001 389.547882 200.052963 297.115204 104.031433 2500 5.99513 0.875942 0.993462 0.991486 3.34133 0.778616 367.59375 34.957447 517.064392 101.393066 119.416435 3200 5.99513 0.8807 0.978226 0.99675 3.625433 0.782845 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 1 1 1 1 174.246193 603.212128 332.636303 0.013327618 0.015087528 0.015075145 0.883353329 0.884078877 1.000821356 -0.05386555 -0.053508986 0.000356564
15 5610 22570 316.705872 84.702126 309.407196 180.100266 118.345421 5100 7.443254 0.938876 0.992371 0.994568 1.758498 0.468933 1061.076904 401.164886 225.452423 299.881744 104.336952 2600 7.443254 0.861853 0.994446 0.992043 3.538318 0.766092 747.277771 35.696808 1199.319214 118.09594 113.400711 7200 7.443254 0.92154 0.969368 0.995972 6.327718 0.843081 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 232.003746 659.912018 711.580963 0.017745336 0.016505704 0.032248995 1.075103254 0.550260119 0.511820717 0.031450176 -0.259431963 -0.290882139
16 5840 22570 285.509094 67.776596 226.509735 143.98494 118.345421 5500 5.99513 0.923822 0.994644 0.995552 1.982909 0.528776 981.71875 399.015961 278.750824 323.337555 102.800247 3200 5.99513 0.903527 0.990799 0.990746 3.036204 0.801438 298.533325 35.452129 236.890518 97.940079 120.741859 4500 5.99513 0.930766 0.992279 0.996773 3.048122 0.801907 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 217.732498 582.702789 263.081196 0.016653767 0.014574548 0.011922894 1.142660922 1.396789008 1.22240026 0.057917375 0.145130809 0.087213434
17 6080 22580 321.074066 74.595741 293.201508 167.82457 126.660263 5400 16.576841 0.934914 0.992714 0.9953 1.913153 0.510174 1142.19043 454.085114 270.508331 309.883301 116.447433 2100 16.576841 0.910558 0.991516 0.99025 3.685873 0.821116 422 43.05851 408.754761 118.606171 116.447433 4600 16.576841 0.931429 0.985435 0.995766 3.557994 0.820079 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 246.478325 688.105316 378.94149 0.018852457 0.017210874 0.017173706 1.095380581 1.097751241 1.002164233 0.039565038 0.040503937 0.000938899
18 6310 22580 334.672729 79.38298 431.848816 169.102448 115.072563 5500 15.979088 0.902512 0.985519 0.995567 1.979112 0.527763 1224.461548 447.452118 226.910995 313.347198 69.557968 1300 15.979088 0.696803 0.99366 0.990753 3.907683 0.61938 353.410706 41.760639 349.640472 126.050369 116.173759 5600 15.979088 0.932658 0.992805 0.995422 2.803726 0.74766 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 255.289749 777.00943 311.650067 0.019526419 0.019434542 0.014124045 1.004727533 1.38249482 1.375989783 0.002048303 0.140663513 0.138615209
19 6550 22580 234.795914 93.047874 212.490982 209.773575 118.614082 4900 16.576841 0.913186 0.991875 0.99408 1.119283 0.298475 1038.571411 437.329773 121.946518 337.74231 79.388519 700 16.576841 0.598052 0.997147 0.989426 3.075041 0.531602 264.951233 46.031914 211.614624 140.013596 117.535744 4100 16.576841 0.92617 0.993423 0.995804 1.892325 0.50462 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 141.74804 601.241638 218.919319 0.010841922 0.015038242 0.009921468 0.720956779 1.092773954 1.515727413 -0.14209077 0.038530335 0.180621105
20 2320 22790 285.586212 86.952126 245.13884 169.912949 127.661545 5800 10.065662 0.950174 0.993088 0.994606 1.68078 0.448208 1150.942871 446.521271 204.356796 331.73172 116.720459 3500 10.065662 0.862753 0.994514 0.989807 3.469499 0.766891 266.380951 64.755318 250.420624 169.031067 121.005196 4200 10.065662 0.939116 0.991524 0.995415 1.575929 0.420248 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 198.634086 704.4216 201.625633 0.015192981 0.017618976 0.009137715 0.862307828 1.662667445 1.928159982 -0.064337671 0.220805393 0.285143065

Total number of rows: 5776

Table truncated, full table size 3003 Kbytes.




Supplementary data files not provided
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