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Sample GSM1242538 Query DataSets for GSM1242538
Status Public on Sep 29, 2016
Title spermatogonian stem cell rep3
Sample type RNA
 
Source name spermatogonian stem cell
Organism Mus musculus
Characteristics strain: CD1
age: 6 days
tissue: testis
cell type: spermatogonian stem cell
Extracted molecule total RNA
Extraction protocol Total RNA from germ line stem cells was extracted using Trizol reagent according to the manufacturer’s instructions.RNA that passed the quality check were hybridized to Mouse WG-6 v2.0 (Illumina).
Label biotin
Label protocol cDNA were prepared with Ambion illumina TotalPrep RNA amplification kits and labeled according standard manufacturer’s instructions.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description SSC3
replicate 3
Data processing The data were background corrected and normalized using quantile normalization with lumi package in R
 
Submission date Sep 30, 2013
Last update date Sep 29, 2016
Contact name Ji Wu
E-mail(s) jiwu@sjtu.edu.cn
Organization name Shanghai Jiao Tong University
Street address No.800, Dongchuan Road, Minhang District
City Shanghai
ZIP/Postal code 200240
Country China
 
Platform ID GPL6887
Series (1)
GSE51313 Comparision of gene expression profiles between female germline stem cells and spermatogonia stem cells

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212602 17.68670167 0.3301282
ILMN_1212603 18.23410667 0.2820513
ILMN_1212605 139.5916417 0
ILMN_1212607 18.96061167 0.2286325
ILMN_1212612 18.65453167 0.2457265
ILMN_1212614 15.55881 0.5694444
ILMN_1212619 62.90509167 0
ILMN_1212623 20.57605167 0.107906
ILMN_1212625 221.797575 0
ILMN_1212626 41.25739167 0
ILMN_1212628 19.03845833 0.2200855
ILMN_1212632 44.63695833 0
ILMN_1212633 27.051085 0.00534188
ILMN_1212636 975.601575 0
ILMN_1212637 153.948975 0
ILMN_1212638 3297.855358 0
ILMN_1212639 30.283825 0.002136752
ILMN_1212644 13.30908667 0.8087607
ILMN_1212645 19.749935 0.1602564
ILMN_1212646 390.140725 0

Total number of rows: 45281

Table truncated, full table size 1427 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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