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Sample GSM12541 Query DataSets for GSM12541
Status Public on Oct 31, 2003
Title mouse hippocampus: long attack latency (LAL) mice
Sample type SAGE
Anchor NlaIII
Tag Count 30937
Tag Length 10
 
Source name mouse hippocampus
Organism Mus musculus
Extracted molecule total RNA
 
Description Two wild house mice lines were genetically selected for short and long attack latency. Mice with an attack latency >600s were considered long attack latency mice (LAL). RNA from the hippocampus of 14 LAL mice was pooled and used as input material for a SAGE library
 
Submission date Oct 30, 2003
Last update date Nov 19, 2008
Contact name Nicole Datson
E-mail(s) datson_n@lacdr.leidenuniv.nl
Phone (+31)71-5276222
Organization name Leiden University
Department Medical Pharmacology
Street address
City Leiden
ZIP/Postal code 2333 CC
Country Netherlands
 
Platform ID GPL11
Series (1)
GSE786 short and long attack latency mice

Data table header descriptions
TAG SAGE tag sequence
COUNT SAGE tag count
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 115 3717.23
AAAAAAAAGA 2 64.65
AAAAAAACAA 1 32.32
AAAAAAAGCA 1 32.32
AAAAAAATAA 3 96.97
AAAAAAATAG 1 32.32
AAAAAACATT 1 32.32
AAAAAAGACA 1 32.32
AAAAAAGCAA 1 32.32
AAAAAAGGTG 1 32.32
AAAAAATAAA 2 64.65
AAAAAATTGA 5 161.62
AAAAACAAAA 2 64.65
AAAAACAAGT 1 32.32
AAAAACAATC 2 64.65
AAAAACACAC 1 32.32
AAAAACAGGT 1 32.32
AAAAACATCT 1 32.32
AAAAACCAAA 1 32.32
AAAAACCAAC 1 32.32

Total number of rows: 16698

Table truncated, full table size 311 Kbytes.




Supplementary data files not provided

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