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Sample GSM1254325 Query DataSets for GSM1254325
Status Public on Dec 27, 2013
Title Enzalutamide + DHT 1nM (ECS195_7)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + DHT 1nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 -2.605731 16 4.424344 0.6
ILMN_2055271 13.72982 21 5.911327 0.05324675
ILMN_1736007 -0.4621407 13 2.62552 0.5012987
ILMN_2383229 12.21112 12 7.359782 0.07272727
ILMN_1806310 16.14655 12 7.727814 0.03506494
ILMN_1779670 -5.701283 14 3.538836 0.7532467
ILMN_1653355 9.726869 15 7.310767 0.1142857
ILMN_1717783 -8.5764 17 2.970174 0.8714285
ILMN_1705025 6.024847 19 5.84635 0.2077922
ILMN_1814316 -3.91487 17 3.198608 0.6636364
ILMN_2359168 -3.854698 22 4.013586 0.6636364
ILMN_1731507 -6.714245 22 4.530893 0.8025974
ILMN_1787689 -4.643678 19 3.003773 0.7012987
ILMN_3241953 -1.719762 15 3.610753 0.5506493
ILMN_1745607 -5.309128 27 4.415548 0.7337663
ILMN_2136495 -5.373049 21 3.391141 0.7415584
ILMN_1668111 -3.58471 29 3.009269 0.6506494
ILMN_2295559 4.125774 13 3.837547 0.2649351
ILMN_1735045 19.01711 22 4.064117 0.01688312
ILMN_1680754 15.83961 17 6.527075 0.03506494

Total number of rows: 47323

Table truncated, full table size 1954 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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