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Sample GSM1254326 Query DataSets for GSM1254326
Status Public on Dec 27, 2013
Title Enzalutamide + Dex 10nM (ECS195_9)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + Dex 10nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 1.51376 16 3.368977 0.3727273
ILMN_2055271 12.76482 20 6.275157 0.06493507
ILMN_1736007 -1.425023 15 3.670281 0.5038961
ILMN_2383229 4.20777 24 4.250689 0.2597403
ILMN_1806310 4.941104 15 2.912372 0.238961
ILMN_1779670 1.219206 16 5.017396 0.3844156
ILMN_1653355 12.51372 15 7.181544 0.06623377
ILMN_1717783 -8.879889 21 4.417976 0.8584415
ILMN_1705025 -4.057277 15 6.096771 0.6441559
ILMN_1814316 -2.02058 14 3.091324 0.5272727
ILMN_2359168 -4.008297 14 5.162287 0.6402597
ILMN_1731507 -7.071221 19 5.120922 0.7831169
ILMN_1787689 1.419613 24 4.744698 0.374026
ILMN_3241953 13.07568 24 7.316069 0.06233766
ILMN_1745607 -3.672242 27 3.99309 0.6181818
ILMN_2136495 -4.781887 11 2.128813 0.6688312
ILMN_1668111 -3.06042 16 4.806821 0.5818182
ILMN_2295559 -5.790073 19 4.023055 0.7168831
ILMN_1735045 17.68988 22 4.757005 0.03636364
ILMN_1680754 -1.925762 9 2.651146 0.525974

Total number of rows: 47323

Table truncated, full table size 1955 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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