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Sample GSM1254327 Query DataSets for GSM1254327
Status Public on Dec 27, 2013
Title Enzalutamide + Dex 100nM (ECS195_10)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + Dex 100nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 2.736968 22 4.374971 0.3116883
ILMN_2055271 -3.621111 16 4.997477 0.6207792
ILMN_1736007 4.289935 15 3.583097 0.2649351
ILMN_2383229 0.9511603 13 6.877501 0.3818182
ILMN_1806310 11.90036 15 4.242554 0.08961039
ILMN_1779670 -0.7444877 18 2.209563 0.4636364
ILMN_1653355 4.787678 24 3.426529 0.2441558
ILMN_1717783 -10.0646 20 2.262073 0.9
ILMN_1705025 4.166494 24 3.365698 0.2675325
ILMN_1814316 4.191795 17 5.188379 0.2675325
ILMN_2359168 0.1820652 22 4.327382 0.4142857
ILMN_1731507 -11.21936 21 2.713549 0.9350649
ILMN_1787689 -4.347538 17 3.19657 0.6610389
ILMN_3241953 0.924227 19 3.274877 0.3818182
ILMN_1745607 -15.69659 21 2.525723 0.9961039
ILMN_2136495 -3.066527 14 3.689698 0.5922078
ILMN_1668111 -5.656006 15 3.938989 0.7285714
ILMN_2295559 -7.341408 14 4.318606 0.8012987
ILMN_1735045 27.50634 21 5.229272 0.01298701
ILMN_1680754 11.30883 14 5.229258 0.0961039

Total number of rows: 47323

Table truncated, full table size 1950 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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