NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1254332 Query DataSets for GSM1254332
Status Public on Dec 27, 2013
Title Enzalutamide 10 micromolar (ECS195_16)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide 10 micromolar
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 -1.524376 23 5.14662 0.4844156
ILMN_2055271 9.74466 15 5.866847 0.1207792
ILMN_1736007 6.066052 27 4.587399 0.2038961
ILMN_2383229 5.309908 24 5.536634 0.2272727
ILMN_1806310 0.2296607 20 4.253307 0.4077922
ILMN_1779670 3.480113 18 4.93004 0.2636364
ILMN_1653355 0.7521617 27 4.153016 0.387013
ILMN_1717783 -11.0051 15 2.453917 0.9181818
ILMN_1705025 -8.793828 12 2.796118 0.8402597
ILMN_1814316 0.8242644 32 3.220331 0.3818182
ILMN_2359168 8.145701 26 3.102313 0.1532468
ILMN_1731507 -11.63922 21 2.656419 0.9285714
ILMN_1787689 -0.864834 15 4.692974 0.4597403
ILMN_3241953 -0.8940091 25 4.772191 0.4597403
ILMN_1745607 -10.38183 19 3.217234 0.9025974
ILMN_2136495 1.189279 15 6.269209 0.3636364
ILMN_1668111 -9.00639 18 3.913337 0.8441558
ILMN_2295559 -6.452083 19 2.422006 0.7428572
ILMN_1735045 20.09453 21 5.263141 0.02727273
ILMN_1680754 17.16563 21 6.303224 0.03766234

Total number of rows: 47323

Table truncated, full table size 1964 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap