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Sample GSM1254335 Query DataSets for GSM1254335
Status Public on Dec 27, 2013
Title Enzalutamide + Dex 100nM (ECS195_20)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + Dex 100nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 3.989835 28 5.263591 0.2831169
ILMN_2055271 9.439402 25 5.252643 0.1376623
ILMN_1736007 13.32822 22 7.500759 0.07142857
ILMN_2383229 1.429625 21 6.504241 0.3805195
ILMN_1806310 5.866912 14 6.324078 0.2207792
ILMN_1779670 2.00292 27 4.893353 0.3623376
ILMN_1653355 9.169077 12 6.286016 0.1415584
ILMN_1717783 -12.24425 26 3.408886 0.9480519
ILMN_1705025 4.343975 21 5.612017 0.2688312
ILMN_1814316 -0.9017844 24 3.332121 0.4675325
ILMN_2359168 -6.378366 22 4.325718 0.7415584
ILMN_1731507 -7.510336 12 5.683237 0.7922078
ILMN_1787689 -0.0782076 17 5.24192 0.4298701
ILMN_3241953 -10.78851 17 4.068252 0.9051948
ILMN_1745607 -8.420419 26 3.554167 0.8324676
ILMN_2136495 6.955961 25 5.405345 0.187013
ILMN_1668111 -2.433295 25 4.424994 0.5454546
ILMN_2295559 3.115443 16 6.726596 0.3090909
ILMN_1735045 2.412957 17 2.822096 0.3454545
ILMN_1680754 10.82703 15 6.488893 0.1103896

Total number of rows: 47323

Table truncated, full table size 1956 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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