NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1254340 Query DataSets for GSM1254340
Status Public on Dec 27, 2013
Title Enzalutamide 10 micromolar (ECS195_26)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide 10 micromolar
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 3.14958 32 3.545636 0.2974026
ILMN_2055271 16.80719 24 6.362864 0.05454545
ILMN_1736007 -3.33624 10 3.08514 0.612987
ILMN_2383229 4.408479 28 3.975555 0.2493507
ILMN_1806310 4.605504 16 5.57669 0.2467532
ILMN_1779670 -0.003191735 24 4.543461 0.438961
ILMN_1653355 2.743684 19 5.182627 0.3194805
ILMN_1717783 -4.510664 18 5.540031 0.6909091
ILMN_1705025 1.929896 20 7.005887 0.3493507
ILMN_1814316 3.156563 17 7.844457 0.2974026
ILMN_2359168 -4.622098 28 2.844027 0.6961039
ILMN_1731507 -8.594306 24 4.886701 0.8597403
ILMN_1787689 -2.932676 20 3.065053 0.5831169
ILMN_3241953 -2.751978 32 3.215605 0.5779221
ILMN_1745607 -4.296891 24 4.635719 0.6831169
ILMN_2136495 -9.673487 20 3.174512 0.8935065
ILMN_1668111 -12.01704 25 3.442729 0.9545454
ILMN_2295559 7.956519 19 5.035226 0.1597403
ILMN_1735045 26.10616 27 5.400359 0.01688312
ILMN_1680754 11.33189 19 5.446607 0.1038961

Total number of rows: 47323

Table truncated, full table size 1952 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap