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Sample GSM1254341 Query DataSets for GSM1254341
Status Public on Dec 27, 2013
Title Enzalutamide + DHT 1nM (ECS195_27)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + DHT 1nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 -5.577117 24 2.481378 0.7311688
ILMN_2055271 15.23874 11 8.933248 0.06233766
ILMN_1736007 -8.198151 23 2.778832 0.8376623
ILMN_2383229 4.040163 20 5.672727 0.2662338
ILMN_1806310 -3.59245 14 4.057148 0.6376624
ILMN_1779670 -5.681673 19 2.791999 0.7337663
ILMN_1653355 -1.963622 20 5.301235 0.561039
ILMN_1717783 -10.62512 22 4.849799 0.9207792
ILMN_1705025 -0.01521487 15 5.376031 0.4415585
ILMN_1814316 3.240374 30 5.029826 0.2935065
ILMN_2359168 -1.784059 29 3.954966 0.5532467
ILMN_1731507 -19.48236 9 2.805476 0.9987013
ILMN_1787689 -1.186073 24 2.795896 0.5194805
ILMN_3241953 -6.177147 24 2.487328 0.7558442
ILMN_1745607 -6.429017 22 3.775353 0.7688312
ILMN_2136495 -11.53389 16 4.195456 0.9454545
ILMN_1668111 -10.58243 27 2.672007 0.9194805
ILMN_2295559 3.653555 10 9.314307 0.2792208
ILMN_1735045 21.87042 27 3.578839 0.02597403
ILMN_1680754 2.749775 15 3.393264 0.3142857

Total number of rows: 47323

Table truncated, full table size 1959 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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