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Sample GSM1254342 Query DataSets for GSM1254342
Status Public on Dec 27, 2013
Title Enzalutamide + Dex 10nM (ECS195_29)
Sample type RNA
 
Source name LREX' cells in charcoal-stripped media
Organism Homo sapiens
Characteristics cell type: prostate cancer
treatment: Enzalutamide + Dex 10nM
cell line: LREX'
Extracted molecule total RNA
Extraction protocol Total RNA was harvested from cells using the RNAeasy (Qiagen) Kit.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA.
 
Hybridization protocol Following fragmentation, cRNA were hybridized for Illumina GX HT12 Array. Slides were washed and stained in the Illumina instrument.
Scan protocol Slides were scanned using Illumina iScanner
Data processing The data were analyzed with GenomeStudio using Illumina default analysis settings. No normalization and background correction are performed first, then quantile normalization and background correction are done.
 
Submission date Oct 29, 2013
Last update date Dec 27, 2013
Contact name Vivek Kumar Arora
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Charles Sawyers
Street address 1275 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL10558
Series (2)
GSE51871 Androgen and Glucocorticoid stimulation of LREX' cells in vitro
GSE52169 Glucocorticoid Receptor Confers Resistance to Anti-Androgens by Bypassing Androgen Receptor Blockade.

Data table header descriptions
ID_REF
VALUE quantile normalized
Avg_NBEADS
BEAD_STDERR
Detection Pval

Data table
ID_REF VALUE Avg_NBEADS BEAD_STDERR Detection Pval
ILMN_1762337 9.272682 23 8.512798 0.1285714
ILMN_2055271 11.51121 23 6.428827 0.09740259
ILMN_1736007 2.59564 19 5.372513 0.312987
ILMN_2383229 10.39565 27 7.139327 0.1090909
ILMN_1806310 0.463285 27 4.214977 0.4116883
ILMN_1779670 6.101493 33 5.069148 0.1935065
ILMN_1653355 6.418559 19 4.21049 0.1831169
ILMN_1717783 -12.30888 18 2.617733 0.9636363
ILMN_1705025 -0.2820503 17 4.35667 0.4467532
ILMN_1814316 -11.00326 23 2.974665 0.9350649
ILMN_2359168 -4.459501 23 4.639288 0.6675324
ILMN_1731507 -13.45575 17 3.469718 0.9779221
ILMN_1787689 -2.278669 14 3.800229 0.5415584
ILMN_3241953 -1.2879 18 4.897503 0.5
ILMN_1745607 -0.01035113 23 5.863116 0.4324675
ILMN_2136495 11.52265 19 8.647151 0.09740259
ILMN_1668111 -8.173471 16 4.476318 0.8545455
ILMN_2295559 -1.392604 19 3.029745 0.5051948
ILMN_1735045 23.25731 22 7.399521 0.02077922
ILMN_1680754 10.72886 26 4.014376 0.1038961

Total number of rows: 47323

Table truncated, full table size 1958 Kbytes.




Supplementary data files not provided
Processed data provided as supplementary file

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