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Sample GSM1256114 Query DataSets for GSM1256114
Status Public on Dec 22, 2014
Title Tak1_1
Sample type RNA
 
Source name Livers of TAK1 ko mice sacrificed at 4 weeks
Organism Mus musculus
Characteristics gender: male
genotype: Alb-Cre/ TAK1 flox
strain: C57BL/6
tissue: liver
age: 4 wk
Treatment protocol No treatment
Growth protocol Mice were maintained at all times on a 12-hour light-dark cycle in a specific pathogen-free environment with free access to rodent chow and water
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Oct 31, 2013
Last update date Dec 22, 2014
Contact name Ekihiro Seki
E-mail(s) Ekihiro.Seki@cshs.org
Phone 310-423-6605
Organization name Cedars-Sinai Medical Center
Department Medicine
Street address 8700 Beverly Blvd., DAVIS, Suite 2099
City Los Angeles
State/province CA
ZIP/Postal code 90048
Country USA
 
Platform ID GPL6885
Series (1)
GSE51962 Gene expression profile of WT and TAK1 KO livers.

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2896528 1126.2
ILMN_2721178 273.7
ILMN_3033922 475.4
ILMN_3092673 3917.6
ILMN_2816356 83.5
ILMN_2808939 1335.1
ILMN_2634564 533
ILMN_2737647 65.7
ILMN_2734484 704.3
ILMN_2952292 122.4
ILMN_2699078 51.6
ILMN_1213681 156.5
ILMN_2735413 442.7
ILMN_2735415 525.9
ILMN_2891688 671.7
ILMN_2637698 610.8
ILMN_2674228 151.2
ILMN_2601546 86.2
ILMN_1230831 72.4
ILMN_2848071 459.4

Total number of rows: 25697

Table truncated, full table size 459 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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